Motif HL_20764.1 Version HL_20764.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZZN_001 | 2ZZN | 0.0000 | 5 | C | RNA (71-MER) | U | 13 | A | 14 | G | 15 | A | 22 | cWW |
| 2 | HL_2ZZN_004 | 2ZZN | 0.2752 | 5 | D | RNA (71-MER) | U | 13 | A | 14 | G | 15 | A | 22 | cWW |
| 3 | HL_1JBS_002 | 1JBS | 0.4867 | 2 | D | 29-mer sarcin/ricin domain RNA analog | C | 13 | G | 14 | A | 15 | G | 18 | cWW |
| 4 | HL_1JBS_001 | 1JBS | 0.5112 | 2 | C | 29-mer sarcin/ricin domain RNA analog | C | 13 | G | 14 | A | 15 | G | 18 | cWW |
| 5 | HL_2QUW_003 | 2QUW | 0.7600 | 2 | B | Hammerhead ribozyme, cleaved fragment | C | 42 | G | 43 | U | 44 | G | 47 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGGGGCUA | 2 |
| CGAUAG | 2 |
| CGUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGGGCU | 2 |
| GAUA | 2 |
| GUGA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_20764.1 | Only in the child motif |
|---|---|---|---|
| HL_08382.1 Compare | HL_2QUW_003, HL_1JBS_002 | HL_2ZZN_004, HL_1JBS_001, HL_2ZZN_001 | HL_3U5F_031, HL_2OEU_002 |
| HL_58223.1 Compare | HL_2ZZN_001 | HL_2ZZN_004, HL_1JBS_001, HL_2QUW_003, HL_1JBS_002 |
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