Motif HL_08382.1 Version HL_08382.1 of this group appears in releases 0.3 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2OEU_002 | 2OEU | 0.7780 | 2 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | U | 30 | A | 31 | G | 32 | cWW |
| 2 | HL_3U5F_031 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | C | 1359 | A | 1360 | U | 1361 | U | 1362 | U | 1363 | G | 1364 | cWW |
| 3 | HL_1JBS_002 | 1JBS | 0.6925 | 0 | D | 29-mer sarcin/ricin domain RNA analog | C | 13 | G | 14 | A | 15 | U | 16 | A | 17 | G | 18 | cWW |
| 4 | HL_2QUW_003 | 2QUW | 0.8304 | 0 | B | Hammerhead ribozyme, cleaved fragment | C | 42 | G | 43 | U | 44 | G | 45 | A | 46 | G | 47 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAUAG | 1 |
| CAUUUG | 1 |
| CGAUAG | 1 |
| CGUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAUA | 1 |
| AUUU | 1 |
| GAUA | 1 |
| GUGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 |
|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_08382.1 | Only in the parent motif |
|---|---|---|---|
| HL_20764.1 Compare | HL_2QUW_003, HL_1JBS_002 | HL_3U5F_031, HL_2OEU_002 | HL_2ZZN_004, HL_1JBS_001, HL_2ZZN_001 |
| HL_66795.1 Compare | HL_2OEU_002 | HL_3U5F_031, HL_2QUW_003, HL_1JBS_002 | HL_1WZ2_007, HL_1WZ2_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_08382.1 | Only in the child motif |
|---|---|---|---|
| HL_08382.2 Compare | HL_3U5F_031, HL_2QUW_003, HL_1JBS_002 | HL_2OEU_002 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.69 | Avg 0.59 | Max 0.92
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