Motif HL_20859.1 Version HL_20859.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R0D_013 | 4R0D | 0.0000 | 0 | A | Group II catalytic intron | G | 524 | U | 525 | U | 526 | C | 527 | G | 528 | C | 529 | cWW | |
| 2 | HL_4V88_202 | 4V88 | 0.9749 | 1 | A6 | SSU rRNA | C | 716 | C | 717 | U | 719 | G | 720 | U | 721 | G | 722 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGC | 1 |
| CCUUGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 1 |
| CUUGU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-cSW
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
Coloring options: