Motif HL_21545.1 Version HL_21545.1 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4GXY_003 | 4GXY | 0.0000 | 1 | Pseudoknot geometry | A | G | 65 | C | 67 | C | 68 | C | 69 | G | 70 | C | 71 | cWW |
| 2 | HL_3OWZ_001 | 3OWZ | 0.6530 | 2 | A | G | 17 | U | 19 | U | 20 | A | 21 | U | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCCCGC | 1 |
| GUUUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCCG | 1 |
| UUUAAU | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_21545.1 | Only in the parent motif |
|---|---|---|---|
| HL_28436.3 Compare | HL_4GXY_003, HL_3OWZ_001 | HL_3OWZ_002, HL_1U6B_002, HL_1S72_067, HL_2QBG_067, HL_4A1B_066, HL_3U5H_067, HL_4IOA_064 |
Children motifs
| Child motif | Common motif instances | Only in HL_21545.1 | Only in the child motif |
|---|---|---|---|
| HL_21545.2 Compare | HL_4GXY_003, HL_3OWZ_001 | HL_1VW4_001 |
- Annotations
-
- (1)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.65 | Avg 0.33 | Max 0.65
Coloring options: