Motif HL_21545.2 Version HL_21545.2 of this group appears in releases 1.14 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3OWZ_001 | 3OWZ | 0.6530 | 2 | A | G | 17 | U | 19 | U | 20 | A | 21 | U | 23 | C | 24 | cWW | |
| 2 | HL_4GXY_003 | 4GXY | 0.0000 | 1 | Pseudoknot geometry | A | G | 65 | C | 67 | C | 68 | C | 69 | G | 70 | C | 71 | cWW |
| 3 | HL_1VW4_001 | 1VW4 | 0.6568 | 0 | e | G | 6 | G | 63 | A | 64 | G | 65 | U | 66 | C | 67 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUAAUC | 1 |
| GUCCCGC | 1 |
| GGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAAU | 1 |
| UCCCG | 1 |
| GAGU | 1 |
Release history
| Release | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|
| Date | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_21545.2 | Only in the parent motif |
|---|---|---|---|
| HL_21545.1 Compare | HL_4GXY_003, HL_3OWZ_001 | HL_1VW4_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.65 | Avg 0.46 | Max 0.76
Coloring options: