Motif HL_22031.1 Version HL_22031.1 of this group appears in releases 3.80 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1P6V_002 | 1P6V | 0.0000 | 2 | B | 45-MER | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | C | 53 | C | 54 | cWW | cWW | ntWW | ||
| 2 | HL_4WSM_226 | 4WSM | 0.3771 | 2 | 3L | tRNA | G | 63 | G | 64 | U | 65 | U | 66 | C | 67 | A | 68 | A | 69 | C | 72 | C | 73 | cWW | ncWW | ntWH | ||
| 3 | HL_4V7M_040 | 4V7M | 0.4454 | 2 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | C | 60 | C | 61 | cWW | ||||
| 4 | HL_4V9I_040 | 4V9I | 0.4733 | 2 | AY | tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 56 | C | 57 | U | 58 | C | 61 | G | 62 | cWW | ncWW | |||
| 5 | HL_6DME_003 | 6DME | 0.6002 | 2 | A | ppGpp Riboswitch | G | 78 | G | 79 | A | 80 | U | 81 | A | 83 | A | 84 | A | 85 | A | 87 | C | 88 | cWW | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUCGAUUCC | 1 |
| GGUUCAAGUCC | 1 |
| GGUUCGAAUCC | 1 |
| CAACUCUACCG | 1 |
| GGAUAAAAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCGAUUC | 1 |
| GUUCAAGUC | 1 |
| GUUCGAAUC | 1 |
| AACUCUACC | 1 |
| GAUAAAAGA | 1 |
- Annotations
- Basepair signature
- cWW-cWW-tWH-F-F-F
- Heat map statistics
- Min 0.38 | Avg 0.39 | Max 0.63
Coloring options: