Motif HL_22554.1 Version HL_22554.1 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_224 | 8C3A | 0.0000 | 3 | CM | SSU rRNA | A | 1537 | U | 1538 | U | 1539 | G | 1540 | U | 1541 | A | 1542 | A | 1543 | U | 1547 | U | 1548 | cWW | ncWH | tWH |
| 2 | HL_4V88_219 | 4V88 | 0.0967 | 3 | A6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGUAAUUGUU | 1 |
| AUUGUAAUUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGUAAUUGU | 1 |
| UUGUAAUUAU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWH-tWH-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: