Motif HL_23455.1 Version HL_23455.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MSF_002 | 6MSF | 0.0977 | 2 | Mini UNCG | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 2 | HL_6MSF_006 | 6MSF | 0.0977 | 2 | S | RNA (10-mer) | G | 6||||P_P | C | 8||||P_P | C | 10||||P_P | ||
| 3 | HL_6MSF_001 | 6MSF | 0.0000 | 2 | Mini UNCG | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 4 | HL_6MSF_005 | 6MSF | 0.0000 | 2 | R | RNA (14-mer) | G | 6||||P_P | C | 8||||P_P | C | 10||||P_P | ||
| 5 | HL_1FJG_005 | 1FJG | 0.1871 | 2 | Mini UNCG (H) | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
| 6 | HL_4YAZ_004 | 4YAZ | 0.2080 | 2 | Mini UNCG | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW |
| 7 | HL_4V8P_179 | 4V8P | 0.2439 | 2 | F1 | LSU rRNA | C | 788 | C | 790 | G | 792 | cWW | |
| 8 | HL_4L8H_001 | 4L8H | 0.4491 | 2 | Mini UNCG | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW |
| 9 | HL_5A2Q_036 | 5A2Q | 0.6273 | 1 | 3 | IRES | C | 280 | U | 281 | G | 283 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAC | 4 |
| CUUUG | 1 |
| CCCUG | 1 |
| CUCCG | 1 |
| CUAAG | 1 |
| CUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCA | 4 |
| UUU | 1 |
| CCU | 1 |
| UCC | 1 |
| UAA | 1 |
| UU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG (4)
- (4)
- Mini UNCG (H) (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.10 | Avg 0.28 | Max 0.68
Coloring options: