Motif HL_23713.1 Version HL_23713.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8V1I_005 | 8V1I | 0.0000 | 0 | B | mascRNA | U | 22 | G | 23 | G | 24 | U | 25 | U | 26 | U | 27 | C | 28 | C | 29 | A | 30 | cWW | |
| 2 | HL_5J7L_135 | 5J7L | 0.5794 | 0 | Pseudoknot geometry (H) | DA | LSU rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGUUUCCA | 1 |
| UGAUAUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUUUCC | 1 |
| GAUAUGA | 1 |
- Annotations
-
- Pseudoknot geometry (H) (1)
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.58 | Avg 0.29 | Max 0.58
Coloring options: