RNA 3D Hub //

Motif HL_24068.2 Version HL_24068.2 of this group appears in releases 3.80 to 3.83

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-63-5
1 HL_6ZDP_0016ZDP0.00005BChains: BC1302C1303U1304A1306U1311G1312G1313cWWncWWncwW
2 HL_6CF2_0016CF20.73291GRNA (35-MER)A13C14U15C17G18G19U20cWW
3 HL_7RGU_0037RGU0.91531FModified SL3 of RocRU9C10U11C13G14G15A16cWWncWWtSW
4 HL_5H9F_0015H9F0.76331LcrRNA (61-MER)G50C51G52C54A55G56C57cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCUAAUUAGUGG1
ACUUCGGU1
UCUUCGGA1
GCGCCAGC1
Non-Watson-Crick part of the motif
SequenceCounts
CUUCGG2
CUAAUUAGUG1
CGCCAG1

Release history

Release3.803.813.823.83
Date2024-01-312024-02-282024-03-272024-04-24
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
    • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.30 | Avg 0.45 | Max 0.92
    Help

    Coloring options:

    HL_6ZDP_001:HL_6ZDP_001 = 0HL_6ZDP_001:HL_6CF2_001 = 0.7329HL_6ZDP_001:HL_7RGU_003 = 0.9153HL_6ZDP_001:HL_5H9F_001 = 0.7633HL_6CF2_001:HL_6ZDP_001 = 0.7329HL_6CF2_001:HL_6CF2_001 = 0HL_6CF2_001:HL_7RGU_003 = 0.3005HL_6CF2_001:HL_5H9F_001 = 0.4557HL_7RGU_003:HL_6ZDP_001 = 0.9153HL_7RGU_003:HL_6CF2_001 = 0.3005HL_7RGU_003:HL_7RGU_003 = 0HL_7RGU_003:HL_5H9F_001 = 0.4139HL_5H9F_001:HL_6ZDP_001 = 0.7633HL_5H9F_001:HL_6CF2_001 = 0.4557HL_5H9F_001:HL_7RGU_003 = 0.4139HL_5H9F_001:HL_5H9F_001 = 0HL_6ZDP_001HL_6CF2_001HL_7RGU_003HL_5H9F_001Discrepancy0.000.200.400.600.80
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