Motif HL_24068.3 Version HL_24068.3 of this group appears in releases 3.84 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6ZDP_001 | 6ZDP | 0.7329 | 6 | B | C | 1302 | C | 1303 | U | 1304 | U | 1311 | G | 1312 | G | 1313 | cWW | ncWW | ncwW |
| 2 | HL_7VYX_001 | 7VYX | 0.7578 | 2 | C | A | 26 | A | 27 | G | 28 | U | 34 | C | 35 | U | 36 | ncWW | ncWW | ncWWa |
| 3 | HL_7E8O_002 | 7E8O | 0.6244 | 0 | X | G | 29 | A | 30 | U | 31 | U | 37 | U | 38 | C | 39 | cWW | ncWW | |
| 4 | HL_6CF2_001 | 6CF2 | 0.0000 | 2 | G | A | 13 | C | 14 | U | 15 | G | 18 | G | 19 | U | 20 | cWW | ||
| 5 | HL_7RGU_003 | 7RGU | 0.3005 | 2 | F | U | 9 | C | 10 | U | 11 | G | 14 | G | 15 | A | 16 | cWW | ncWW | tSW |
| 6 | HL_5H9F_001 | 5H9F | 0.4557 | 2 | L | G | 50 | C | 51 | G | 52 | A | 55 | G | 56 | C | 57 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAUUAGUGG | 1 |
| AAGUUUCU | 1 |
| GAUUUC | 1 |
| ACUUCGGU | 1 |
| UCUUCGGA | 1 |
| GCGCCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUCGG | 2 |
| CUAAUUAGUG | 1 |
| AGUUUC | 1 |
| AUUU | 1 |
| CGCCAG | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.30 | Avg 0.55 | Max 0.95
Coloring options: