Motif HL_25023.1 Version HL_25023.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_216 | 4V8P | 0.2076 | 0 | F1 | LSU rRNA | A | 2662 | A | 2663 | C | 2664 | G | 2665 | G | 2666 | A | 2667 | A | 2668 | A | 2669 | U | 2670 | cWW | ntHH |
| 2 | HL_4V88_170 | 4V88 | 0.0000 | 0 | A5 | LSU rRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 3 | HL_3J79_056 | 3J79 | 0.1626 | 0 | A | LSU rRNA | A | 3012 | A | 3013 | C | 3014 | A | 3015 | G | 3016 | A | 3017 | A | 3018 | A | 3019 | U | 3020 | cWW | ncWH |
| 4 | HL_4V9F_057 | 4V9F | 0.1918 | 0 | 0 | LSU rRNA | G | 2338 | A | 2339 | C | 2340 | A | 2341 | G | 2342 | A | 2343 | G | 2344 | A | 2345 | C | 2346 | cWW | cWH |
| 5 | HL_3J7P_057 | 3J7P | 0.3813 | 0 | 5 | LSU rRNA | G | 4250 | A | 4251 | C | 4252 | A | 4253 | G | 4254 | A | 4255 | A | 4256 | A | 4257 | C | 4258 | cWW | |
| 6 | HL_5AJ0_060 | 5AJ0 | 0.3644 | 0 | A2 | LSU rRNA | G | 4212 | A | 4213 | C | 4214 | A | 4215 | G | 4216 | A | 4217 | A | 4218 | A | 4219 | C | 4220 | cWW | cWH |
| 7 | HL_4V91_057 | 4V91 | 0.3569 | 0 | 1 | LSU rRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAGAAAU | 3 |
| GACAGAAAC | 2 |
| AACGGAAAU | 1 |
| GACAGAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAAA | 5 |
| ACGGAAA | 1 |
| ACAGAGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWH-R-R-R-R
- Heat map statistics
- Min 0.15 | Avg 0.27 | Max 0.43
Coloring options: