Motif HL_26055.3 Version HL_26055.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2GDI_001 | 2GDI | 0.6439 | 0 | X | TPP riboswitch | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | ||
| 2 | HL_5J7L_014 | 5J7L | 0.6739 | 0 | AA | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | ||
| 3 | HL_4LFB_014 | 4LFB | 0.6445 | 0 | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | ||
| 4 | HL_3AL0_002 | 3AL0 | 0.4661 | 2 | E | tRNAGln | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW | ||
| 5 | HL_4FEN_002 | 4FEN | 0.0000 | 1 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 6 | HL_1Y27_002 | 1Y27 | 0.0548 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |||
| 7 | HL_1Y26_002 | 1Y26 | 0.0614 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 8 | HL_4XNR_002 | 4XNR | 0.0658 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 9 | HL_4LX6_002 | 4LX6 | 0.1287 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |||
| 10 | HL_3LA5_002 | 3LA5 | 0.1849 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |||
| 11 | HL_4LFB_002 | 4LFB | 0.6298 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | |||
| 12 | HL_4WF9_058 | 4WF9 | 0.8306 | 0 | X | LSU rRNA | C | 2578 | U | 2579 | G | 2580 | U | 2581 | U | 2582 | C | 2583 | G | 2584 | cWW | |||
| 13 | HL_4IOA_061 | 4IOA | 0.8708 | 0 | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | U | 2534 | C | 2535 | G | 2536 | cWW | |||
| 14 | HL_5TBW_063 | 5TBW | 0.8811 | 0 | 1 | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | U | 2924 | C | 2925 | A | 2926 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 4 |
| GCUCAAC | 2 |
| GCUUCCAC | 2 |
| CUGUUCG | 2 |
| CUGCGUG | 1 |
| ACUCUGGAU | 1 |
| GUUUUAC | 1 |
| UUGUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 4 |
| UGUUC | 3 |
| CUCAA | 2 |
| CUUCCA | 2 |
| UGCGU | 1 |
| CUCUGGA | 1 |
| UUUUA | 1 |
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