RNA 3D Hub //

Motif HL_26055.3 Version HL_26055.3 of this group appears in releases 3.12 to 3.17

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-52-6
1 HL_2GDI_0012GDI0.64390XTPP riboswitchC27U28G29C30G31U32G33cWWtWW
2 HL_5J7L_0145J7L0.67390AA SSU rRNAG617C618U619C620A621A622C623cWWntWH
3 HL_4LFB_0144LFB0.64450A SSU rRNAG617C618U619C620A621A622C623cWWtWH
4 HL_3AL0_0023AL00.46612E tRNAA31C32C34U35G36A38U39cWWcWW
5 HL_4FEN_0024FEN0.00001BA24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainG46U47U49C50U51A52C53cWWntWH
6 HL_1Y27_0021Y270.05481XPurine riboswitchG46U47U49C50U51A52C53cWW
7 HL_1Y26_0021Y260.06141XPurine riboswitchG46U47U49C50U51A52C53cWWntWH
8 HL_4XNR_0024XNR0.06581XPurine riboswitchG46U47U49C50U51A52C53cWWntWH
9 HL_4LX6_0024LX60.12871APurine riboswitchG46C47U49C50C51A52C53cWW
10 HL_3LA5_0023LA50.18491APurine riboswitchG46C47U49C50C51A52C53cWW
11 HL_4LFB_0024LFB0.62980A SSU rRNAG80U81U82U83U84A88C89cWW
12 HL_4WF9_0584WF90.83060X LSU rRNAC2578U2579G2580U2581U2582C2583G2584cWW
13 HL_4IOA_0614IOA0.87080X LSU rRNAC2530U2531G2532U2533U2534C2535G2536cWW
14 HL_5TBW_0635TBW0.881101 LSU rRNAU2920U2921G2922U2923U2924C2925A2926cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUUCUAC4
GCUCAAC2
GCUUCCAC2
CUGUUCG2
CUGCGUG1
ACUCUGGAU1
GUUUUAC1
UUGUUCA1
Non-Watson-Crick part of the motif
SequenceCounts
UUUCUA4
UGUUC3
CUCAA2
CUUCCA2
UGCGU1
CUCUGGA1
UUUUA1

Release history

Release3.123.133.143.153.163.17
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (14)
    • Basepair signature
    cWW-R-R-R-R
    Heat map statistics
    Min 0.05 | Avg 0.55 | Max 0.89
    Help

    Coloring options:

    HL_2GDI_001:HL_2GDI_001 = 0HL_2GDI_001:HL_5J7L_014 = 0.6167HL_2GDI_001:HL_4LFB_014 = 0.632HL_2GDI_001:HL_3AL0_002 = 0.6843HL_2GDI_001:HL_4FEN_002 = 0.6439HL_2GDI_001:HL_1Y27_002 = 0.6605HL_2GDI_001:HL_1Y26_002 = 0.6578HL_2GDI_001:HL_4XNR_002 = 0.662HL_2GDI_001:HL_4LX6_002 = 0.6693HL_2GDI_001:HL_3LA5_002 = 0.6287HL_2GDI_001:HL_4LFB_002 = 0.7412HL_2GDI_001:HL_4WF9_058 = 0.7223HL_2GDI_001:HL_4IOA_061 = 0.7711HL_2GDI_001:HL_5TBW_063 = 0.794HL_5J7L_014:HL_2GDI_001 = 0.6167HL_5J7L_014:HL_5J7L_014 = 0HL_5J7L_014:HL_4LFB_014 = 0.1222HL_5J7L_014:HL_3AL0_002 = 0.5682HL_5J7L_014:HL_4FEN_002 = 0.6739HL_5J7L_014:HL_1Y27_002 = 0.6819HL_5J7L_014:HL_1Y26_002 = 0.6883HL_5J7L_014:HL_4XNR_002 = 0.6947HL_5J7L_014:HL_4LX6_002 = 0.7299HL_5J7L_014:HL_3LA5_002 = 0.7104HL_5J7L_014:HL_4LFB_002 = 0.7236HL_5J7L_014:HL_4WF9_058 = 0.7159HL_5J7L_014:HL_4IOA_061 = 0.787HL_5J7L_014:HL_5TBW_063 = 0.8012HL_4LFB_014:HL_2GDI_001 = 0.632HL_4LFB_014:HL_5J7L_014 = 0.1222HL_4LFB_014:HL_4LFB_014 = 0HL_4LFB_014:HL_3AL0_002 = 0.5732HL_4LFB_014:HL_4FEN_002 = 0.6445HL_4LFB_014:HL_1Y27_002 = 0.6525HL_4LFB_014:HL_1Y26_002 = 0.6613HL_4LFB_014:HL_4XNR_002 = 0.6663HL_4LFB_014:HL_4LX6_002 = 0.7075HL_4LFB_014:HL_3LA5_002 = 0.6927HL_4LFB_014:HL_4LFB_002 = 0.7322HL_4LFB_014:HL_4WF9_058 = 0.7588HL_4LFB_014:HL_4IOA_061 = 0.8239HL_4LFB_014:HL_5TBW_063 = 0.848HL_3AL0_002:HL_2GDI_001 = 0.6843HL_3AL0_002:HL_5J7L_014 = 0.5682HL_3AL0_002:HL_4LFB_014 = 0.5732HL_3AL0_002:HL_3AL0_002 = 0HL_3AL0_002:HL_4FEN_002 = 0.4661HL_3AL0_002:HL_1Y27_002 = 0.4689HL_3AL0_002:HL_1Y26_002 = 0.4709HL_3AL0_002:HL_4XNR_002 = 0.4995HL_3AL0_002:HL_4LX6_002 = 0.5179HL_3AL0_002:HL_3LA5_002 = 0.5354HL_3AL0_002:HL_4LFB_002 = 0.6594HL_3AL0_002:HL_4WF9_058 = 0.8145HL_3AL0_002:HL_4IOA_061 = 0.8644HL_3AL0_002:HL_5TBW_063 = 0.851HL_4FEN_002:HL_2GDI_001 = 0.6439HL_4FEN_002:HL_5J7L_014 = 0.6739HL_4FEN_002:HL_4LFB_014 = 0.6445HL_4FEN_002:HL_3AL0_002 = 0.4661HL_4FEN_002:HL_4FEN_002 = 0HL_4FEN_002:HL_1Y27_002 = 0.0548HL_4FEN_002:HL_1Y26_002 = 0.0614HL_4FEN_002:HL_4XNR_002 = 0.0658HL_4FEN_002:HL_4LX6_002 = 0.1287HL_4FEN_002:HL_3LA5_002 = 0.1849HL_4FEN_002:HL_4LFB_002 = 0.6298HL_4FEN_002:HL_4WF9_058 = 0.8306HL_4FEN_002:HL_4IOA_061 = 0.8708HL_4FEN_002:HL_5TBW_063 = 0.8811HL_1Y27_002:HL_2GDI_001 = 0.6605HL_1Y27_002:HL_5J7L_014 = 0.6819HL_1Y27_002:HL_4LFB_014 = 0.6525HL_1Y27_002:HL_3AL0_002 = 0.4689HL_1Y27_002:HL_4FEN_002 = 0.0548HL_1Y27_002:HL_1Y27_002 = 0HL_1Y27_002:HL_1Y26_002 = 0.0522HL_1Y27_002:HL_4XNR_002 = 0.0797HL_1Y27_002:HL_4LX6_002 = 0.1217HL_1Y27_002:HL_3LA5_002 = 0.1961HL_1Y27_002:HL_4LFB_002 = 0.6272HL_1Y27_002:HL_4WF9_058 = 0.8411HL_1Y27_002:HL_4IOA_061 = 0.8799HL_1Y27_002:HL_5TBW_063 = 0.8888HL_1Y26_002:HL_2GDI_001 = 0.6578HL_1Y26_002:HL_5J7L_014 = 0.6883HL_1Y26_002:HL_4LFB_014 = 0.6613HL_1Y26_002:HL_3AL0_002 = 0.4709HL_1Y26_002:HL_4FEN_002 = 0.0614HL_1Y26_002:HL_1Y27_002 = 0.0522HL_1Y26_002:HL_1Y26_002 = 0HL_1Y26_002:HL_4XNR_002 = 0.0664HL_1Y26_002:HL_4LX6_002 = 0.123HL_1Y26_002:HL_3LA5_002 = 0.2006HL_1Y26_002:HL_4LFB_002 = 0.6343HL_1Y26_002:HL_4WF9_058 = 0.8312HL_1Y26_002:HL_4IOA_061 = 0.8709HL_1Y26_002:HL_5TBW_063 = 0.8804HL_4XNR_002:HL_2GDI_001 = 0.662HL_4XNR_002:HL_5J7L_014 = 0.6947HL_4XNR_002:HL_4LFB_014 = 0.6663HL_4XNR_002:HL_3AL0_002 = 0.4995HL_4XNR_002:HL_4FEN_002 = 0.0658HL_4XNR_002:HL_1Y27_002 = 0.0797HL_4XNR_002:HL_1Y26_002 = 0.0664HL_4XNR_002:HL_4XNR_002 = 0HL_4XNR_002:HL_4LX6_002 = 0.1101HL_4XNR_002:HL_3LA5_002 = 0.1797HL_4XNR_002:HL_4LFB_002 = 0.6295HL_4XNR_002:HL_4WF9_058 = 0.8235HL_4XNR_002:HL_4IOA_061 = 0.8629HL_4XNR_002:HL_5TBW_063 = 0.8749HL_4LX6_002:HL_2GDI_001 = 0.6693HL_4LX6_002:HL_5J7L_014 = 0.7299HL_4LX6_002:HL_4LFB_014 = 0.7075HL_4LX6_002:HL_3AL0_002 = 0.5179HL_4LX6_002:HL_4FEN_002 = 0.1287HL_4LX6_002:HL_1Y27_002 = 0.1217HL_4LX6_002:HL_1Y26_002 = 0.123HL_4LX6_002:HL_4XNR_002 = 0.1101HL_4LX6_002:HL_4LX6_002 = 0HL_4LX6_002:HL_3LA5_002 = 0.1747HL_4LX6_002:HL_4LFB_002 = 0.5948HL_4LX6_002:HL_4WF9_058 = 0.807HL_4LX6_002:HL_4IOA_061 = 0.8425HL_4LX6_002:HL_5TBW_063 = 0.8418HL_3LA5_002:HL_2GDI_001 = 0.6287HL_3LA5_002:HL_5J7L_014 = 0.7104HL_3LA5_002:HL_4LFB_014 = 0.6927HL_3LA5_002:HL_3AL0_002 = 0.5354HL_3LA5_002:HL_4FEN_002 = 0.1849HL_3LA5_002:HL_1Y27_002 = 0.1961HL_3LA5_002:HL_1Y26_002 = 0.2006HL_3LA5_002:HL_4XNR_002 = 0.1797HL_3LA5_002:HL_4LX6_002 = 0.1747HL_3LA5_002:HL_3LA5_002 = 0HL_3LA5_002:HL_4LFB_002 = 0.5553HL_3LA5_002:HL_4WF9_058 = 0.7604HL_3LA5_002:HL_4IOA_061 = 0.7934HL_3LA5_002:HL_5TBW_063 = 0.8HL_4LFB_002:HL_2GDI_001 = 0.7412HL_4LFB_002:HL_5J7L_014 = 0.7236HL_4LFB_002:HL_4LFB_014 = 0.7322HL_4LFB_002:HL_3AL0_002 = 0.6594HL_4LFB_002:HL_4FEN_002 = 0.6298HL_4LFB_002:HL_1Y27_002 = 0.6272HL_4LFB_002:HL_1Y26_002 = 0.6343HL_4LFB_002:HL_4XNR_002 = 0.6295HL_4LFB_002:HL_4LX6_002 = 0.5948HL_4LFB_002:HL_3LA5_002 = 0.5553HL_4LFB_002:HL_4LFB_002 = 0HL_4LFB_002:HL_4WF9_058 = 0.6107HL_4LFB_002:HL_4IOA_061 = 0.6458HL_4LFB_002:HL_5TBW_063 = 0.6397HL_4WF9_058:HL_2GDI_001 = 0.7223HL_4WF9_058:HL_5J7L_014 = 0.7159HL_4WF9_058:HL_4LFB_014 = 0.7588HL_4WF9_058:HL_3AL0_002 = 0.8145HL_4WF9_058:HL_4FEN_002 = 0.8306HL_4WF9_058:HL_1Y27_002 = 0.8411HL_4WF9_058:HL_1Y26_002 = 0.8312HL_4WF9_058:HL_4XNR_002 = 0.8235HL_4WF9_058:HL_4LX6_002 = 0.807HL_4WF9_058:HL_3LA5_002 = 0.7604HL_4WF9_058:HL_4LFB_002 = 0.6107HL_4WF9_058:HL_4WF9_058 = 0HL_4WF9_058:HL_4IOA_061 = 0.1312HL_4WF9_058:HL_5TBW_063 = 0.187HL_4IOA_061:HL_2GDI_001 = 0.7711HL_4IOA_061:HL_5J7L_014 = 0.787HL_4IOA_061:HL_4LFB_014 = 0.8239HL_4IOA_061:HL_3AL0_002 = 0.8644HL_4IOA_061:HL_4FEN_002 = 0.8708HL_4IOA_061:HL_1Y27_002 = 0.8799HL_4IOA_061:HL_1Y26_002 = 0.8709HL_4IOA_061:HL_4XNR_002 = 0.8629HL_4IOA_061:HL_4LX6_002 = 0.8425HL_4IOA_061:HL_3LA5_002 = 0.7934HL_4IOA_061:HL_4LFB_002 = 0.6458HL_4IOA_061:HL_4WF9_058 = 0.1312HL_4IOA_061:HL_4IOA_061 = 0HL_4IOA_061:HL_5TBW_063 = 0.1704HL_5TBW_063:HL_2GDI_001 = 0.794HL_5TBW_063:HL_5J7L_014 = 0.8012HL_5TBW_063:HL_4LFB_014 = 0.848HL_5TBW_063:HL_3AL0_002 = 0.851HL_5TBW_063:HL_4FEN_002 = 0.8811HL_5TBW_063:HL_1Y27_002 = 0.8888HL_5TBW_063:HL_1Y26_002 = 0.8804HL_5TBW_063:HL_4XNR_002 = 0.8749HL_5TBW_063:HL_4LX6_002 = 0.8418HL_5TBW_063:HL_3LA5_002 = 0.8HL_5TBW_063:HL_4LFB_002 = 0.6397HL_5TBW_063:HL_4WF9_058 = 0.187HL_5TBW_063:HL_4IOA_061 = 0.1704HL_5TBW_063:HL_5TBW_063 = 0HL_2GDI_001HL_5J7L_014HL_4LFB_014HL_3AL0_002HL_4FEN_002HL_1Y27_002HL_1Y26_002HL_4XNR_002HL_4LX6_002HL_3LA5_002HL_4LFB_002HL_4WF9_058HL_4IOA_061HL_5TBW_063Discrepancy0.000.200.400.600.80
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