#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_5J7L_2115J7L0.42192DA LSU rRNAPSU955G956C957A959A960G962cWWntSH
2 HL_5J7L_0145J7L0.12321AA SSU rRNAG617C618C620A621A622C623cWWntWH
3 HL_4LFB_0144LFB0.00001A SSU rRNAG617C618C620A621A622C623cWWtWH
4 HL_6CZR_0856CZR0.179711a SSU rRNAG601C602C604A605A606C607cWWntWH
5 HL_2A43_0012A430.24672ARNA PseudoknotG6C7C9C10G11C13cWWtWH
6 HL_7U4A_0027U4A0.48935ARNA (70-MER)U28U29G34A35A36G38cWWtWH
7 HL_5TPY_0055TPY0.56375ARNA (71-MER)U28U29G34A35A36G38cWWtWH
8 HL_4RMO_0014RMO0.70106BRNA (45-MER)C11U12A18U19A20G22cWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GCUCAAC3
UUUGGGGAAAG2
(PSU)GCUAACG1
GCACCGUC1
CUGACCGAUAUG1
Non-Watson-Crick part of the motif
SequenceCounts
CUCAA3
UUGGGGAAA2
GCUAAC1
CACCGU1
UGACCGAUAU1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
  • Basepair signature
    cWW-tWH-F-F
    Heat map statistics
    Min 0.12 | Avg 0.40 | Max 0.70
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