Motif HL_27271.2 Version HL_27271.2 of this group appears in releases 1.10 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_039 | 2QBG | 0.8893 | 1 | B | G | 1492 | C | 1493 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | |
| 2 | HL_4IOA_036 | 4IOA | 0.8045 | 1 | Pseudoknot geometry with 3' bulge (H) | X | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW |
| 3 | HL_1U6B_002 | 1U6B | 0.5233 | 0 | Pseudoknot geometry | B | C | 70 | G | 71 | C | 72 | C | 73 | C | 74 | G | 75 | cWW |
| 4 | HL_3OWZ_002 | 3OWZ | 0.2875 | 0 | A | G | 49 | G | 50 | A | 51 | A | 52 | A | 53 | C | 54 | cWW | |
| 5 | HL_3U5H_067 | 3U5H | 0.2261 | 0 | 5 | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW | |
| 6 | HL_4A1B_066 | 4A1B | 0.2380 | 0 | 1 | U | 3057 | G | 3058 | A | 3059 | A | 3060 | A | 3061 | A | 3062 | cWW | |
| 7 | HL_1S72_067 | 1S72 | 0.1530 | 0 | Ribsomal LSU H95 (H) | 0 | C | 2737 | G | 2738 | A | 2739 | G | 2740 | A | 2741 | G | 2742 | cWW |
| 8 | HL_4M30_001 | 4M30 | 0.0000 | 0 | C | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | |
| 9 | HL_4M30_002 | 4M30 | 0.1166 | 0 | D | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | |
| 10 | HL_2QBG_067 | 2QBG | 0.2400 | 0 | B | U | 2701 | G | 2702 | C | 2703 | C | 2704 | A | 2705 | A | 2706 | cWW | |
| 11 | HL_4IOA_064 | 4IOA | 0.2301 | 0 | Ribsomal LSU H95 (H) | X | U | 2680 | A | 2681 | C | 2682 | C | 2683 | A | 2684 | A | 2685 | cWW |
| 12 | HL_2NR0_003 | 2NR0 | 0.6058 | 0 | E | C | 45|||D | A | 45|||E | A | 45|||F | U | 45|||G | A | 45|||H | G | 46|||I | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAAG | 2 |
| GCAAAUC | 1 |
| GAAAAUC | 1 |
| CGCCCG | 1 |
| GGAAAC | 1 |
| UGAUCA | 1 |
| UGAAAA | 1 |
| CGAGAG | 1 |
| UGCCAA | 1 |
| UACCAA | 1 |
| CAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| GCAA | 2 |
| CAAAU | 1 |
| AAAAU | 1 |
| GCCC | 1 |
| GAUC | 1 |
| GAGA | 1 |
| GCCA | 1 |
| ACCA | 1 |
| AAUA | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_27271.2 | Only in the parent motif |
|---|---|---|---|
| HL_27271.1 Compare | HL_2NR0_003, HL_3OWZ_002, HL_1U6B_002, HL_1S72_067, HL_2QBG_067, HL_4A1B_066, HL_4IOA_036, HL_3U5H_067, HL_2QBG_039, HL_4IOA_064 | HL_4M30_001, HL_4M30_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_27271.2 | Only in the child motif |
|---|---|---|---|
| HL_27271.3 Compare | HL_2NR0_003, HL_3OWZ_002, HL_4M30_002, HL_1U6B_002, HL_1S72_067, HL_2QBG_067, HL_4M30_001, HL_4A1B_066, HL_4IOA_036, HL_3U5H_067, HL_2QBG_039, HL_4IOA_064 | HL_4PQV_002, HL_4CUV_067 |
- Annotations
-
- (8)
- Ribsomal LSU H95 (H) (2)
- Pseudoknot geometry (1)
- Pseudoknot geometry with 3' bulge (H) (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.47 | Max 0.96
Coloring options: