Motif HL_27338.1 Version HL_27338.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_069 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW |
| 2 | HL_2QBG_070 | 2QBG | 0.2850 | 1 | B | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 3 | HL_3PYO_068 | 3PYO | 0.4965 | 1 | A | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | U | 2825 | A | 2826 | C | 2827 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUACAAGAC | 1 |
| GAAGACGAC | 1 |
| GAAGACUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UACAAGA | 1 |
| AAGACGA | 1 |
| AAGACUA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_27338.1 | Only in the child motif |
|---|---|---|---|
| HL_54261.1 Compare | HL_1S72_069, HL_2QBG_070, HL_3PYO_068 | HL_3O58_071, HL_2ZJR_066 |
Coloring options: