Motif HL_54261.1 Version HL_54261.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_069 | 1S72 | 0.1352 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW |
| 2 | HL_3PYO_068 | 3PYO | 0.0000 | 1 | A | 23S ribosomal RNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | U | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 3 | HL_2ZJR_066 | 2ZJR | 0.4074 | 1 | X | LSU rRNA | G | 2794 | A | 2796 | G | 2797 | A | 2798 | C | 2799 | C | 2800 | A | 2801 | C | 2802 | cWW | cSW |
| 4 | HL_2QBG_070 | 2QBG | 0.4965 | 1 | B | 23S rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 5 | HL_3O58_071 | 3O58 | 0.6090 | 1 | 1 | 25S ribosomal RNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUACAAGAC | 1 |
| GAAGACUAC | 1 |
| GAAGACCAC | 1 |
| GAAGACGAC | 1 |
| GUAUACGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UACAAGA | 1 |
| AAGACUA | 1 |
| AAGACCA | 1 |
| AAGACGA | 1 |
| UAUACGA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_54261.1 | Only in the parent motif |
|---|---|---|---|
| HL_27338.1 Compare | HL_1S72_069, HL_2QBG_070, HL_3PYO_068 | HL_3O58_071, HL_2ZJR_066 | |
| HL_11520.1 Compare | HL_3O58_071, HL_2ZJR_066 | HL_1S72_069, HL_3PYO_068, HL_2QBG_070 |
Children motifs
| Child motif | Common motif instances | Only in HL_54261.1 | Only in the child motif |
|---|---|---|---|
| HL_39872.1 Compare | HL_1S72_069, HL_2QBG_070, HL_2ZJR_066 | HL_3O58_071, HL_3PYO_068 | HL_4A1B_070, HL_3U5H_071, HL_3V2F_066 |
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