Motif HL_27429.3 Version HL_27429.3 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_012 | 4IOA | 0.2506 | 2 | X | LSU rRNA | G | 395 | U | 396 | U | 397 | C | 398 | U | 400 | G | 401 | A | 403 | A | 404 | C | 405 | cWW | |
| 2 | HL_3V2F_013 | 3V2F | 0.0000 | 2 | A | LSU rRNA | G | 382 | U | 383 | U | 384 | C | 385 | U | 387 | G | 388 | A | 390 | G | 391 | C | 392 | cWW | ntsS |
| 3 | HL_2QBG_014 | 2QBG | 0.3378 | 2 | B | LSU rRNA | A | 382 | C | 383 | A | 384 | C | 385 | U | 387 | G | 388 | U | 390 | A | 391 | U | 392 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGUGAAAC | 1 |
| GUUCGUGGAGC | 1 |
| ACACGUGGUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCGUGAAA | 1 |
| UUCGUGGAG | 1 |
| CACGUGGUA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_27429.3 | Only in the parent motif |
|---|---|---|---|
| HL_27429.2 Compare | HL_2QBG_014, HL_3V2F_013 | HL_4IOA_012 | HL_2ZJR_012 |
Children motifs
| Child motif | Common motif instances | Only in HL_27429.3 | Only in the child motif |
|---|---|---|---|
| HL_27429.4 Compare | HL_2QBG_014, HL_4IOA_012 | HL_3V2F_013 | HL_4NVV_012 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.25 | Avg 0.22 | Max 0.42
Coloring options: