Hairpin Loop Motif Atlas Release 4.10

#	Motif	Core Nts	Instances
1	HL_34789.6 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 2 parents GNRA (247) GNRA variation (11) GNRA with GA tSW pair (2) GNRA related (1)	6	434
2	HL_33597.6 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Updated, 1 parent T-loop with 2 stacked bulged bases (134)	9	139
3	HL_61337.6 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent UNCG (43) UNCG variation (1)	5	67
4	HL_81376.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (32) Anticodon loop related (4)	9	44
5	HL_90436.5 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent Mini UNCG (30) Mini UNCG with extended bulge (1)	3	42
6	HL_02262.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents LSU A loop (9) GNRA variation (4) GNRA (1)	7	36
7	HL_52651.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (17)	8	31
8	HL_64036.3 View exemplar Basepair signature: cWW-tSW-F History status: Exact match Fab BL3-6 binding hairpin with tSW (22) Other HL (3)	5	28
9	HL_75660.10 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	24
10	HL_13999.5 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent T-loop with 2 bulged bases not stacked (7) T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (2) T-loop related (1)	7	24
11	HL_63894.4 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent T-loop related (3) tRNA anticodon loop with synthetase (2) Other HL (1) T-loop (1)	7	22
12	HL_36992.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (20)	10	22
13	HL_89167.4 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent tRNA anticodon loop with synthetase (1) tRNA D-loop (1)	4	20
14	HL_09122.3 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: Updated, 1 parent	9	19
15	HL_11974.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent LSU P loop (9) tRNA anticodon loop (4)	8	19
16	HL_01957.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Mini UNCG (2) Mini UNCG with extended bulge (1)	3	18
17	HL_12626.2 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG (13) Mini UNCG related (2)	3	17
18	HL_56046.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents Purine riboswitch (8) tRNA anticodon loop (3) Anticodon loop related (2) Pseudoknot geometry (2)	7	17
19	HL_49081.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent Pseudoknot geometry with 3' bulge (10)	5	17
20	HL_27670.6 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent T-loop with unstacked turn (9)	6	17
21	HL_23875.1 View exemplar Basepair signature: cWW-cSW-F History status: New id, 2 parents UNCG variation (2)	5	16
22	HL_30680.5 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match Pseudoknot geometry (12)	7	16
23	HL_87268.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA with extra cWW (5) GNRA related (2) T-loop related (1) tRNA anticodon loop (1) GNRA with extra near cWW (1)	8	16
24	HL_77449.3 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Updated, 1 parent	8	16
25	HL_98423.5 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA with tandem sheared (8) GNRA with extra near cWW (1)	8	15
26	HL_12125.4 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4) Ribsomal LSU H95 (3)	6	15
27	HL_38491.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	14
28	HL_28253.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, 2 parents tRNA anticodon loop (1) GNRA related (1)	7	14
29	HL_76371.4 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Updated, 1 parent	7	14
30	HL_67772.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent T-loop related (5) Other HL (1) T-loop with 1 bulged base (1)	7	14
31	HL_37889.3 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Updated, 1 parent	8	13
32	HL_20490.1 View exemplar Basepair signature: cWW-cWS-F History status: Exact match tRNA D-loop (12) Other HL (1)	5	13
33	HL_28592.4 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	13
34	HL_00911.4 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4)	7	13
35	HL_02042.3 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: Updated, 1 parent	11	13
36	HL_59138.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent	8	13
37	HL_59381.4 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	12
38	HL_80709.5 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	12
39	HL_50204.3 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Updated, 1 parent	7	12
40	HL_53269.4 View exemplar Basepair signature: cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW History status: Updated, 2 parents	13	12
41	HL_23048.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: Exact match tRNA D-loop (3)	7	11
42	HL_27530.3 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	11
43	HL_78372.3 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent	7	11
44	HL_35704.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	11
45	HL_36265.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	11
46	HL_47171.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent	8	11
47	HL_87681.3 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Updated, 1 parent	7	10
48	HL_52011.3 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Updated, 1 parent	9	10
49	HL_17803.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot with intercalation (3)	10	10
50	HL_37569.4 View exemplar Basepair signature: cWW-F-F-F History status: Exact match GNRA related (2)	5	10
51	HL_63054.2 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Exact match tRNA D-loop (7)	8	10
52	HL_21043.1 View exemplar Basepair signature: cWW-cSW-F History status: New id, 1 parent	5	9
53	HL_86834.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	9
54	HL_31089.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	9
55	HL_02452.3 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Updated, 1 parent	9	9
56	HL_78347.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	8
57	HL_56131.4 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	8
58	HL_79773.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	8
59	HL_97756.4 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Exact match	14	8
60	HL_18470.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent tRNA D-loop (2)	8	8
61	HL_97725.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Pseudoknot geometry (2) tRNA anticodon loop (1)	6	7
62	HL_35677.5 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match Pseudoknot with intercalation (3)	9	7
63	HL_69752.4 View exemplar Basepair signature: cWW-F History status: Exact match UNCG related (1)	3	7
64	HL_22758.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent	8	7
65	HL_87306.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Anticodon loop related (2) tRNA anticodon loop (1) Pseudoknot geometry (1) GNRA with extra near cWW (1)	8	7
66	HL_44506.4 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	6
67	HL_97521.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	6
68	HL_68749.3 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Updated, 1 parent	13	6
69	HL_97696.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
70	HL_51853.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Exact match	9	6
71	HL_17440.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (2)	8	6
72	HL_33350.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	6
73	HL_76195.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Updated, 1 parent	8	6
74	HL_14063.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	6
75	HL_86432.3 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F History status: Updated, 1 parent	9	6
76	HL_18141.3 View exemplar Basepair signature: cWW-F-cSH History status: Exact match tRNA D-loop (4)	5	6
77	HL_25795.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	6
78	HL_73535.3 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F History status: Updated, 1 parent	11	6
79	HL_82185.3 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: Updated, 1 parent	10	6
80	HL_50951.3 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: Updated, 1 parent	9	6
81	HL_32279.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	5
82	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (5)	6	5
83	HL_27656.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 2 parents GNRA-like with tWH (2) GNRA related (1)	7	5
84	HL_92697.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
85	HL_89199.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (3)	5	5
86	HL_98864.4 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with unstacked turn (4)	10	5
87	HL_15296.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	5
88	HL_55043.2 View exemplar Basepair signature: cWW-tSH-cWS-F History status: Exact match	7	5
89	HL_82710.4 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	5
90	HL_99456.2 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	7	5
91	HL_55735.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	4
92	HL_20174.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	4
93	HL_69186.3 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match tRNA anticodon loop with synthetase (3)	6	4
94	HL_20751.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	4
95	HL_57684.1 View exemplar Basepair signature: cWW-F-F History status: Exact match tRNA D-loop (3)	4	4
96	HL_50006.6 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	4
97	HL_46530.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	4	4
98	HL_01182.2 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: Updated, 1 parent	14	4
99	HL_14856.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	4
100	HL_25307.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent T-loop with 1 bulged base (1)	7	4
101	HL_36488.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
102	HL_07480.3 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	4
103	HL_81314.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	4
104	HL_34080.1 View exemplar Basepair signature: cWW-cWH-F History status: New id, 2 parents UNCG variation (2)	5	4
105	HL_77193.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F History status: Exact match T-loop related (4)	8	4
106	HL_12111.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (1)	5	4
107	HL_34245.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match tRNA anticodon loop (1) Anticodon loop related (1)	9	4
108	HL_97067.2 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent	7	4
109	HL_68572.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	3
110	HL_02817.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
111	HL_13571.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents UNCG variation (2) UNCG (1)	5	3
112	HL_64374.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
113	HL_33487.2 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
114	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
115	HL_76590.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
116	HL_07380.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	3
117	HL_40612.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
118	HL_98821.2 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Updated, 1 parent	11	3
119	HL_61768.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
120	HL_94376.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	11	3
121	HL_67667.4 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
122	HL_50525.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	3
123	HL_31962.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	3
124	HL_99373.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: Exact match	11	3
125	HL_16651.2 View exemplar Basepair signature: cWW History status: Exact match	2	3
126	HL_08550.2 View exemplar Basepair signature: cWW-F-F-F-cSH History status: Exact match	7	3
127	HL_68571.2 View exemplar Basepair signature: cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	17	3
128	HL_37671.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Exact match Pseudoknot (3)	7	3
129	HL_91503.8 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
130	HL_34964.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	9	2
131	HL_48408.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	2
132	HL_74379.5 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	11	2
133	HL_02621.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
134	HL_51121.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F-F History status: Exact match	11	2
135	HL_91542.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	8	2
136	HL_32704.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	15	2
137	HL_12758.3 View exemplar Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH History status: Exact match G-quadruplex (2)	22	2
138	HL_35113.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	2
139	HL_49073.1 View exemplar Basepair signature: cWW-cWS History status: Exact match UNCG related (1)	5	2
140	HL_87689.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
141	HL_17051.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	2
142	HL_09841.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
143	HL_32871.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	2
144	HL_68791.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	2
145	HL_60358.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
146	HL_88364.5 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	15	2
147	HL_10322.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
148	HL_56226.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	5	2
149	HL_69139.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
150	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
151	HL_00557.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	7	2
152	HL_24179.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	7	2
153	HL_49425.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
154	HL_60499.1 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	11	2
155	HL_88397.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
156	HL_04642.4 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
157	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
158	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
159	HL_46419.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	2
160	HL_00824.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (1)	8	2
161	HL_49556.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: Exact match tRNA D-loop (2)	11	2
162	HL_60848.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	2
163	HL_39665.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	2
164	HL_93383.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	2
165	HL_25137.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
166	HL_18050.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
167	HL_29561.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match	16	2
168	HL_53014.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	2
169	HL_93658.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with 3 stacked bulged bases (1)	10	2
170	HL_10611.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
171	HL_33632.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
172	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
173	HL_70052.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
174	HL_76640.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
175	HL_65821.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
176	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
177	HL_42760.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	2
178	HL_94488.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (1)	14	2
179	HL_99324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
180	HL_26027.1 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG related (1)	4	2
181	HL_37101.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
182	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
183	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
184	HL_91228.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	9	2
185	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	2
186	HL_32152.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Anticodon loop related (1)	9	2
187	HL_27510.1 View exemplar Basepair signature: cWW-F History status: Exact match	4	2
188	HL_63151.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	2
189	HL_78283.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	8	2
190	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
191	HL_18978.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F History status: Exact match	9	1
192	HL_84331.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
193	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
194	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
195	HL_19136.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	1
196	HL_84433.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
197	HL_23600.1 View exemplar Basepair signature: cWW-F-cWH-F History status: Exact match	6	1
198	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
199	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
200	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
201	HL_19930.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
202	HL_45232.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
203	HL_85461.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	1
204	HL_97714.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	1
205	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
206	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
207	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
208	HL_76094.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	5	1
209	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
210	HL_51858.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
211	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
212	HL_45584.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tHH-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	50	1
213	HL_17785.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
214	HL_80008.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
215	HL_56954.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
216	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
217	HL_88600.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
218	HL_07074.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
219	HL_65266.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
220	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match tRNA D-loop (1)	9	1
221	HL_10466.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
222	HL_46486.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
223	HL_86417.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
224	HL_65313.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
225	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
226	HL_41764.1 View exemplar Basepair signature: cWW-cWW-tWH-F-F-F-F-F History status: New id, 1 parent	11	1
227	HL_11542.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	1
228	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
229	HL_46984.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	1
230	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
231	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
232	HL_61907.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
233	HL_76842.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	7	1
234	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
235	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
236	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
237	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
238	HL_87266.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
239	HL_16270.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
240	HL_62737.1 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match Other HL (1)	6	1
241	HL_91218.1 View exemplar Basepair signature: cWW-cSH-F History status: Exact match	5	1
242	HL_08179.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F History status: Exact match	11	1
243	HL_42985.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
244	HL_94980.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
245	HL_73580.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Exact match	8	1
246	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
247	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
248	HL_42986.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	19	1
249	HL_55605.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: Exact match	12	1
250	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
251	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
252	HL_59330.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
253	HL_74027.1 View exemplar Basepair signature: cWW History status: Exact match	17	1
254	HL_16725.1 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH-F History status: Exact match	23	1

Coloring options:
Nucleotide numbers

Exact match 174; Updated, 1 parent 57; New id, 2 parents 9; New id, 1 parent 11; Updated, 2 parents 2; New id, > 2 parents 1;

Hairpin Loop Motif Atlas Release 4.10 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 4.10

Download

CSV

JSON

annotations