Motif HL_28339.2 Version HL_28339.2 of this group appears in releases 1.16 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2Y8Y_001 | 2Y8Y | 0.5921 | 2 | B | RNA (19-mer) | C | 11 | C | 13 | G | 14 | G | 16 | cWW |
| 2 | HL_4CUV_069 | 4CUV | 0.0000 | 0 | 1 | LSU rRNA | C | 3194 | U | 3195 | U | 3196 | G | 3197 | cWW |
| 3 | HL_3U5H_069 | 3U5H | 0.8272 | 0 | 5 | LSU rRNA | C | 3194 | U | 3195 | U | 3196 | G | 3197 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 2 |
| CGCGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 2 |
| GCGU | 1 |
Release history
| Release | 1.16 | 1.17 | 1.18 |
|---|---|---|---|
| Date | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 2 parents | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_28339.2 | Only in the parent motif |
|---|---|---|---|
| HL_28339.1 Compare | HL_4CUV_069, HL_2Y8Y_001 | HL_3U5H_069 | |
| HL_25878.1 Compare | HL_3U5H_069 | HL_4CUV_069, HL_2Y8Y_001 | HL_1FJG_018, HL_4P9R_001, HL_3U5H_004, HL_4CUV_004 |
Children motifs
This motif has no children motifs.
Coloring options: