Motif HL_25878.1 Version HL_25878.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_069 | 3U5H | 0.7377 | 0 | 5 | 25S rRNA | C | 3194 | U | 3195 | U | 3196 | G | 3197 | cWW | |
| 2 | HL_3U5H_004 | 3U5H | 0.2680 | 1 | 5 | 25S rRNA | C | 132 | U | 133 | U | 134 | G | 136 | cWW | |
| 3 | HL_4CUV_004 | 4CUV | 0.0000 | 1 | 1 | 25S RRNA | C | 132 | U | 133 | U | 134 | G | 136 | cWW | |
| 4 | HL_1FJG_018 | 1FJG | 0.5914 | 1 | Mini UNCG (H) | A | SSU rRNA | G | 838 | U | 839 | C | 840 | C | 848 | cWW |
| 5 | HL_4P9R_001 | 4P9R | 0.9097 | 1 | A | RNA (189-MER) | C | 22 | U | 216 | C | 217 | G | 219 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCG | 2 |
| CUUG | 1 |
| GUCUC | 1 |
| CUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUC | 2 |
| UU | 1 |
| UCU | 1 |
| UCG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_25878.1 | Only in the parent motif |
|---|---|---|---|
| HL_55718.1 Compare | HL_1FJG_018, HL_3U5H_069, HL_3U5H_004 | HL_4P9R_001, HL_4CUV_004 | HL_1ZBH_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_25878.1 | Only in the child motif |
|---|---|---|---|
| HL_21419.1 Compare | HL_1FJG_018, HL_4P9R_001 | HL_3U5H_069, HL_3U5H_004, HL_4CUV_004 | |
| HL_27353.1 Compare | HL_3U5H_004, HL_4CUV_004 | HL_1FJG_018, HL_4P9R_001, HL_3U5H_069 | HL_4QI2_001, HL_4QIL_002, HL_4TUX_001, HL_4AQ7_002, HL_1ZBH_001 |
| HL_28339.2 Compare | HL_3U5H_069 | HL_1FJG_018, HL_4P9R_001, HL_3U5H_004, HL_4CUV_004 | HL_4CUV_069, HL_2Y8Y_001 |
- Annotations
-
- (4)
- Mini UNCG (H) (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.27 | Avg 0.62 | Max 0.97
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