Motif HL_28567.2 Version HL_28567.2 of this group appears in releases 3.26 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KR9_002 | 4KR9 | 0.6646 | 0 | M | RNA (39-MER) | G | 19 | G | 20 | A | 21 | A | 22 | A | 23 | C | 24 | cWW | |||
| 2 | HL_2OEU_002 | 2OEU | 0.5658 | 2 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | U | 30 | A | 31 | G | 32 | cWW | |||
| 3 | HL_3ADD_003 | 3ADD | 0.0000 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW | |||
| 4 | HL_6U8D_001 | 6U8D | 0.3594 | 0 | A | JIIIabc RNA (68-MER) | G | 161 | A | 162 | G | 163 | U | 164 | A | 165 | C | 166 | cWW | ncSS | ||
| 5 | HL_4RUM_001 | 4RUM | 0.6068 | 1 | A | NiCo riboswitch RNA | C | 27 | A | 28 | G | 29 | G | 31 | C | 32 | G | 33 | cWW | |||
| 6 | HL_3DIL_004 | 3DIL | 0.9676 | 0 | A | RNA (174-MER) | G | 149 | G | 150 | U | 151 | C | 152 | U | 153 | C | 154 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 1 |
| CCAAAUAG | 1 |
| CGAGUG | 1 |
| GAGUAC | 1 |
| CAGAGCG | 1 |
| GGUCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 1 |
| CAAAUA | 1 |
| GAGU | 1 |
| AGUA | 1 |
| AGAGC | 1 |
| GUCU | 1 |
Release history
| Release | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
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