Motif HL_28980.1 Version HL_28980.1 of this group appears in releases 3.83 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5B2P_004 | 5B2P | 0.9978 | 2 | B | Guide RNA | U | 82 | G | 85 | A | 86 | cWW | |
| 2 | HL_5TBW_045 | 5TBW | 0.9619 | 2 | 1 | LSU rRNA | G | 2110 | A | 2113 | C | 2114 | cWW | |
| 3 | HL_8C3A_045 | 8C3A | 0.9559 | 2 | 1 | LSU rRNA | G | 2088 | A | 2091 | C | 2092 | cWW | |
| 4 | HL_6FQL_001 | 6FQL | 0.9801 | 2 | B | RNA (13-mer) | U | 5 | A | 8 | A | 9 | cWW | |
| 5 | HL_6FQ3_001 | 6FQ3 | 0.9818 | 2 | B | RNA (13-mer) | U | 5 | A | 8 | A | 9 | cWW | |
| 6 | HL_4ILL_001 | 4ILL | 0.3747 | 4 | R | RNA (24-mer) | U | 8 | A | 12 | A | 14 | cWW | |
| 7 | HL_4ILM_002 | 4ILM | 0.3109 | 4 | C | RNA (16-mer) | U | 8 | A | 12 | A | 14 | cWW | |
| 8 | HL_4OOG_001 | 4OOG | 0.2105 | 3 | D | 34-mer RNA | G | 14 | U | 17 | C | 19 | cWW | |
| 9 | HL_8C3A_044 | 8C3A | 0.1526 | 5 | 1 | LSU rRNA | G | 1948 | A | 2070 | C | 2072 | cWW | |
| 10 | HL_8UIW_004 | 8UIW | 0.0000 | 3 | N | yjdF RNA (R. gauvreauii) | U | 105 | U | 108 | A | 110 | cWW | |
| 11 | HL_1ZBH_001 | 1ZBH | 0.1471 | 3 | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW | |
| 12 | HL_2ZUE_002 | 2ZUE | 0.1645 | 6 | B | tRNA-Arg | C | 931 | A | 937 | G | 939 | cWW | |
| 13 | HL_5T16_002 | 5T16 | 0.1736 | 3 | H | RNA substrate analog | G | 16 | U | 19 | C | 21 | cWW | |
| 14 | HL_4QOZ_001 | 4QOZ | 0.1565 | 3 | A | histone mRNA stem-loop | U | 11 | U | 14 | A | 16 | cWW | |
| 15 | HL_4TUW_002 | 4TUW | 0.2488 | 3 | C | HISTONE MRNA 3' STEM LOOP | U | 13 | U | 16 | A | 18 | cWW | |
| 16 | HL_5WTK_001 | 5WTK | 0.4206 | 8 | B | RNA (58-MER) | C | 7 | A | 15 | G | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUCA | 3 |
| GGUAC | 2 |
| UACUAUA | 2 |
| GAGUCC | 2 |
| UUUGA | 1 |
| UUUAA | 1 |
| UCCAA | 1 |
| GGUUUAAC | 1 |
| UCCUUA | 1 |
| CCUCCUAAG | 1 |
| CAAUAUCGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUC | 3 |
| GUA | 2 |
| ACUAU | 2 |
| AGUC | 2 |
| UUG | 1 |
| UUA | 1 |
| CCA | 1 |
| GUUUAA | 1 |
| CCUU | 1 |
| CUCCUAA | 1 |
| AAUAUCGAA | 1 |
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