Motif HL_29129.1 Version HL_29129.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7U4A_002 | 7U4A | 0.2201 | 3 | A | RNA (70-MER) | U | 28 | U | 29 | G | 32 | G | 33 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH |
| 2 | HL_5TPY_005 | 5TPY | 0.0000 | 3 | A | RNA (71-MER) | U | 28 | U | 29 | G | 32 | G | 33 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH |
| 3 | HL_8X5V_002 | 8X5V | 0.4454 | 2 | B | RNA (110-mer) | G | 71 | U | 72 | G | 74 | G | 75 | G | 76 | G | 77 | A | 78 | C | 80 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGGAAAG | 2 |
| GUUGGGGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGGAAA | 2 |
| UUGGGGAU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tWH-F-F-F-F
- Heat map statistics
- Min 0.22 | Avg 0.26 | Max 0.51
Coloring options: