Motif HL_29369.1 Version HL_29369.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3OWZ_003 | 3OWZ | 0.0000 | 0 | B | G | 17 | U | 23 | C | 24 | cWW | |
| 2 | HL_3D0U_002 | 3D0U | 0.4117 | 6 | Pseudoknot geometry | A | U | 90 | C | 97 | G | 98 | cWW |
| 3 | HL_3DIR_002 | 3DIR | 0.4816 | 6 | A | U | 93 | C | 100 | G | 101 | cWW | |
| 4 | HL_3PYO_002 | 3PYO | 0.5040 | 6 | A | C | 87 | G | 94 | G | 95 | cWW | |
| 5 | HL_1F27_001 | 1F27 | 0.6526 | 7 | Pseudoknot geometry | A | U | 7 | C | 15 | A | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCUCCCG | 2 |
| GUC | 1 |
| CGGUAGCGG | 1 |
| UCAGAGGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCUCCC | 2 |
| U | 1 |
| GGUAGCG | 1 |
| CAGAGGAC | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_29369.1 | Only in the child motif |
|---|---|---|---|
| HL_29369.2 Compare | HL_3D0U_002, HL_1F27_001, HL_3PYO_002, HL_3DIR_002 | HL_3OWZ_003 | HL_2QBG_004 |
- Annotations
-
- (3)
- Pseudoknot geometry (2)
- Basepair signature
- Heat map statistics
- Min 0.15 | Avg 0.36 | Max 0.65
Coloring options: