Motif HL_29382.1 Version HL_29382.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O30_029 | 3O30 | 0.3653 | 1 | 1 | 18S ribosomal RNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 2 | HL_2XZM_028 | 2XZM | 0.1853 | 1 | A | 18S RRNA | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1287 | C | 1288 | cWW | cwW | |
| 3 | HL_1FJG_025 | 1FJG | 0.0000 | 1 | T-loop related (H) | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
| 4 | HL_2AW7_025 | 2AW7 | 0.1411 | 1 | A | 16S ribosomal RNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 5 | HL_3R4F_001 | 3R4F | 0.2349 | 1 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 2 |
| CUUAAUUG | 1 |
| GUUAAUUC | 1 |
| AUUGAGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 2 |
| UUAAGU | 2 |
| UUGAGU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_29382.1 | Only in the child motif |
|---|---|---|---|
| HL_82294.1 Compare | HL_1FJG_025, HL_3R4F_001, HL_2XZM_028, HL_2AW7_025 | HL_3O30_029 | HL_4A1B_025, HL_3IVK_010, HL_3U5H_024, HL_3U5F_030 |
- Annotations
-
- (3)
- T-loop related (H) (1)
- T-loop related (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.20 | Max 0.37
Coloring options: