Motif HL_82294.1 Version HL_82294.1 of this group appears in releases 0.3 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2AW7_025 | 2AW7 | 0.2647 | 0 | A | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW | |
| 2 | HL_1FJG_025 | 1FJG | 0.2851 | 0 | T-loop related (H) | A | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW |
| 3 | HL_2XZM_028 | 2XZM | 0.2131 | 0 | A | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1286 | U | 1287 | C | 1288 | cWW | cwW | |
| 4 | HL_3U5F_030 | 3U5F | 0.0000 | 0 | 6 | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1314 | U | 1315 | G | 1316 | cWW | cwW | |
| 5 | HL_3U5H_024 | 3U5H | 0.2887 | 0 | 5 | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1081 | U | 1082 | G | 1083 | cWW | cwW | |
| 6 | HL_4A1B_025 | 4A1B | 0.4062 | 0 | 1 | C | 1104 | U | 1105 | U | 1106 | A | 1107 | A | 1108 | A | 1109 | U | 1110 | G | 1111 | cWW | cwW | |
| 7 | HL_3R4F_001 | 3R4F | 0.5757 | 0 | T-loop related | A | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW |
| 8 | HL_3IVK_010 | 3IVK | 0.9154 | 0 | C | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 2 |
| CUUAAUUG | 2 |
| GUUAAUUC | 1 |
| CUUAAAUG | 1 |
| AUUGAGUU | 1 |
| GUUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 3 |
| UUAAGU | 2 |
| UUAAAU | 1 |
| UUGAGU | 1 |
| UUAAAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_82294.1 | Only in the parent motif |
|---|---|---|---|
| HL_29382.1 Compare | HL_1FJG_025, HL_3R4F_001, HL_2XZM_028, HL_2AW7_025 | HL_4A1B_025, HL_3IVK_010, HL_3U5H_024, HL_3U5F_030 | HL_3O30_029 |
| HL_48274.1 Compare | HL_3IVK_010 | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_2XZM_028, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 | HL_3IVK_005 |
Children motifs
| Child motif | Common motif instances | Only in HL_82294.1 | Only in the child motif |
|---|---|---|---|
| HL_82294.2 Compare | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_2XZM_028, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 | HL_3IVK_010 | HL_3U5H_038 |
| HL_19132.1 Compare | HL_3IVK_010 | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_2XZM_028, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 |
- Annotations
-
- (6)
- T-loop related (H) (1)
- T-loop related (1)
- Basepair signature
- cWW-cWW-R-tSH-R
- Heat map statistics
- Min 0.13 | Avg 0.45 | Max 0.93
Coloring options: