Motif HL_29831.1 Version HL_29831.1 of this group appears in releases 0.3 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3V2F_041 | 3V2F | 0.5984 | 1 | A | 23S Ribosomal RNA | U | 1720 | G | 1721 | A | 1722 | G | 1740 | A | 1741 | G | 1742 | cWW | ||
| 2 | HL_2AW7_027 | 2AW7 | 0.2956 | 1 | A | 16S ribosomal RNA | U | 1165 | G | 1166 | A | 1167 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH | |
| 3 | HL_1FJG_012 | 1FJG | 0.0000 | 1 | GNRA (H) | A | SSU rRNA | C | 458 | G | 459 | A | 460 | G | 462 | A | 463 | G | 474 | cWW | tSH |
| 4 | HL_2QBG_017 | 2QBG | 0.2873 | 1 | B | 23S rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUGAG | 1 |
| UGAUAAA | 1 |
| CGACGAG | 1 |
| CGGCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGA | 1 |
| GAUAA | 1 |
| GACGA | 1 |
| GGCGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_29831.1 | Only in the parent motif |
|---|---|---|---|
| HL_88639.1 Compare | HL_1FJG_012, HL_2QBG_017, HL_2AW7_027 | HL_3V2F_041 | HL_3PYO_027, HL_3PYO_043, HL_3KTW_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_29831.1 | Only in the child motif |
|---|---|---|---|
| HL_86077.1 Compare | HL_1FJG_012, HL_2QBG_017, HL_2AW7_027 | HL_3V2F_041 | HL_4IOA_004, HL_4NVV_041 |
- Annotations
-
- (3)
- GNRA (H) (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.29 | Avg 0.36 | Max 0.75
Coloring options: