Motif HL_86077.1 Version HL_86077.1 of this group appears in releases 1.14 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4NVV_041 | 4NVV | 0.5703 | 1 | A | LSU rRNA | U | 1765 | G | 1766 | A | 1767 | G | 1769 | A | 1770 | G | 1771 | cWW | ||
| 2 | HL_2AW7_027 | 2AW7 | 0.2956 | 1 | A | SSU rRNA | U | 1165 | G | 1166 | A | 1167 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH | |
| 3 | HL_1FJG_012 | 1FJG | 0.0000 | 1 | GNRA (H) | A | SSU rRNA | C | 458 | G | 459 | A | 460 | G | 462 | A | 463 | G | 474 | cWW | tSH |
| 4 | HL_2QBG_017 | 2QBG | 0.2873 | 1 | B | LSU rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | ntSH | |
| 5 | HL_4IOA_004 | 4IOA | 0.6832 | 0 | GNRA variation | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUGAG | 1 |
| UGAUAAA | 1 |
| CGACGAG | 1 |
| CGGCGAG | 1 |
| CGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGA | 1 |
| GAUAA | 1 |
| GACGA | 1 |
| GGCGA | 1 |
| GUAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_86077.1 | Only in the parent motif |
|---|---|---|---|
| HL_29831.1 Compare | HL_1FJG_012, HL_2QBG_017, HL_2AW7_027 | HL_4IOA_004, HL_4NVV_041 | HL_3V2F_041 |
| HL_49036.3 Compare | HL_4IOA_004 | HL_1FJG_012, HL_4NVV_041, HL_2QBG_017, HL_2AW7_027 | HL_4IOA_045, HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_4A1B_041, HL_4BPP_030, HL_1S72_016 |
Children motifs
| Child motif | Common motif instances | Only in HL_86077.1 | Only in the child motif |
|---|---|---|---|
| HL_86077.2 Compare | HL_1FJG_012, HL_4NVV_041, HL_2QBG_017, HL_2AW7_027 | HL_4IOA_004 | HL_1VWW_013 |
| HL_74411.1 Compare | HL_4IOA_004 | HL_1FJG_012, HL_4NVV_041, HL_2QBG_017, HL_2AW7_027 | HL_2QBG_043, HL_4A1B_041, HL_4IOA_045, HL_1S72_022, HL_4A1B_052, HL_4AL5_001, HL_4CUV_042, HL_3D0U_003, HL_1VX6_042, HL_1VWW_043, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_1VX6_072, HL_4BPP_030, HL_1S72_016 |
- Annotations
-
- (3)
- GNRA (H) (1)
- GNRA variation (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.29 | Avg 0.45 | Max 0.95
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