Motif HL_31823.1 Version HL_31823.1 of this group appears in releases 3.8 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_030 | 4LFB | 0.0000 | 2 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW | |
| 2 | HL_5J7L_029 | 5J7L | 0.3302 | 1 | AA | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAGCCAUGC | 1 |
| GAUCAGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCAGCCAUG | 1 |
| AUCAGAAUG | 1 |
- Annotations
- Basepair signature
- cWW-cWW-tWW-R-R-R-R
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
Coloring options: