Motif HL_32133.1 Version HL_32133.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3A2K_001 | 3A2K | 0.0000 | 6 | C | tRNA | C | 13 | A | 14 | G | 15 | A | 22 | G | 23 | cWW | ncWS | |
| 2 | HL_2AZX_004 | 2AZX | 0.0106 | 4 | tRNA D-loop | D | tRNA | C | 513 | A | 514 | A | 515 | A | 521 | G | 522 | cWW | cWS |
| 3 | HL_3AL0_001 | 3AL0 | 0.2953 | 4 | tRNA D-loop | E | tRNA | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 4 | HL_3A2K_004 | 3A2K | 0.3272 | 6 | D | tRNA | C | 13 | A | 14 | G | 15 | A | 22 | G | 23 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUUGGUUAG | 2 |
| CAAUGGUAG | 1 |
| UAACGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUUGGUUA | 2 |
| AAUGGUA | 1 |
| AACGGUA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_32133.1 | Only in the child motif |
|---|---|---|---|
| HL_27658.1 Compare | HL_3AL0_001 | HL_2AZX_004, HL_3A2K_004, HL_3A2K_001 | HL_2FK6_001, HL_3L0U_001 |
| HL_44522.1 Compare | HL_3A2K_001 | HL_2AZX_004, HL_3A2K_004, HL_3AL0_001 |
- Annotations
-
- tRNA D-loop (2)
- (2)
- Basepair signature
- Heat map statistics
- Min 0.01 | Avg 0.19 | Max 0.33
Coloring options: