Motif HL_27658.1 Version HL_27658.1 of this group appears in releases 0.3 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3AL0_001 | 3AL0 | 0.4075 | 4 | tRNA D-loop | E | tRNAGln | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 2 | HL_3L0U_001 | 3L0U | 0.0000 | 5 | A | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ||
| 3 | HL_2FK6_001 | 2FK6 | 0.3711 | 5 | R | TRNA(THR) | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAACGGUAG | 1 |
| CAGUCGGUAG | 1 |
| CAGCAGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACGGUA | 1 |
| AGUCGGUA | 1 |
| AGCAGGUA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_27658.1 | Only in the parent motif |
|---|---|---|---|
| HL_49433.1 Compare | HL_2FK6_001, HL_3L0U_001 | HL_3AL0_001 | HL_1GAX_004, HL_1GAX_001, HL_2AZX_001, HL_2ZUE_001 |
| HL_32133.1 Compare | HL_3AL0_001 | HL_2FK6_001, HL_3L0U_001 | HL_2AZX_004, HL_3A2K_004, HL_3A2K_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_27658.1 | Only in the child motif |
|---|---|---|---|
| HL_81752.1 Compare | HL_3AL0_001 | HL_2FK6_001, HL_3L0U_001 | HL_1EIY_001 |
| HL_12595.1 Compare | HL_3L0U_001 | HL_3AL0_001, HL_2FK6_001 | HL_1QU2_001 |
- Annotations
-
- (2)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.37 | Avg 0.30 | Max 0.59
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