Motif HL_32458.2 Version HL_32458.2 of this group appears in releases 3.48 to 3.53
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4V9I_040 | 4V9I | 0.4133 | 2 | AY | tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 58 | A | 59 | C | 60 | C | 61 | G | 62 | cWW | ncWW | ||
2 | HL_4V7M_040 | 4V7M | 0.0000 | 2 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | A | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | |||
3 | HL_1P6V_002 | 1P6V | 0.6024 | 2 | B | 45-MER | G | 44 | G | 45 | U | 46 | U | 47 | A | 50 | U | 51 | U | 52 | C | 53 | C | 54 | cWW | cWW | ntWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAACUCUACCG | 1 |
GGUUCGAAUCC | 1 |
GGUUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AACUCUACC | 1 |
GUUCGAAUC | 1 |
GUUCGAUUC | 1 |
- Annotations
- Basepair signature
- cWW-L-cWW-R-R-R
- Heat map statistics
- Min 0.41 | Avg 0.37 | Max 0.64
Coloring options: