Motif HL_32617.3 Version HL_32617.3 of this group appears in releases 3.63 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3W3S_001 | 3W3S | 0.1864 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
| 2 | HL_3AM1_001 | 3AM1 | 0.0000 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 3 | HL_3ADD_001 | 3ADD | 0.3451 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 4 | HL_3RG5_005 | 3RG5 | 0.3039 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 5 | HL_5F9R_004 | 5F9R | 0.4895 | 0 | D-loop related | A | tracrRNA | G | 105 | A | 106 | G | 107 | U | 108 | C | 109 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 2 |
| CUGGUG | 1 |
| UUGGUA | 1 |
| GAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 4 |
| AGU | 1 |
Release history
| Release | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (4)
- D-loop related (1)
- Basepair signature
- cWW-cSH
- Heat map statistics
- Min 0.19 | Avg 0.31 | Max 0.55
Coloring options: