#Varna 2DMotifNum NtsInstances
1
  • HL_43074.18
HL_43074.18
  • Basepair signature: cWW-tSH-R-R
  • History status: Exact match
  • GNRA (188)
  • Other HL (36)
  • GNRA with GA tSW pair (4)
  • 6255
    2
    • HL_33239.17
    HL_33239.17
    • Basepair signature: cWW-R-R-tWH-R-R-R
    • History status: Exact match
  • T-loop with 2 stacked bulged bases (80)
  • T-loop with 2 bulged bases not stacked (8)
  • Other HL (2)
  • 995
    3
    • HL_79299.11
    HL_79299.11
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
  • UNCG (29)
  • Other HL (4)
  • 545
    4
    • HL_97724.2
    HL_97724.2
    • Basepair signature: cWW-bif-R-R-R-R-R
    • History status: Exact match
  • tRNA anticodon loop (21)
  • Turnip yellow mosaic virus TLS RNA anticodon loop (1)
  • Guanidine riboswitch aptamer P2 hairpin (1)
  • 927
    5
    • HL_93727.5
    HL_93727.5
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Exact match
    821
    6
    • HL_46142.8
    HL_46142.8
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    820
    7
    • HL_69353.7
    HL_69353.7
    • Basepair signature: cWW
    • History status: Exact match
    318
    8
    • HL_02361.6
    HL_02361.6
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
  • GNRA with one bulged base (10)
  • Other HL (1)
  • 616
    9
    • HL_32512.8
    HL_32512.8
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    714
    10
    • HL_26055.6
    HL_26055.6
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    714
    11
    • HL_08002.6
    HL_08002.6
    • Basepair signature: cWW-R-R-tWH-R-R
    • History status: Exact match
    814
    12
    • HL_35978.6
    HL_35978.6
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    1112
    13
    • HL_86880.5
    HL_86880.5
    • Basepair signature: cWW-R-R
    • History status: Exact match
    512
    14
    • HL_79272.3
    HL_79272.3
    • Basepair signature: cWW-R-R
    • History status: Exact match
    511
    15
    • HL_73266.5
    HL_73266.5
    • Basepair signature: cWW-R-cSW-R-cSH
    • History status: Exact match
    911
    16
    • HL_87219.4
    HL_87219.4
    • Basepair signature: cWW-R-tSH-R-R-R-R
    • History status: Exact match
    1011
    17
    • HL_46891.3
    HL_46891.3
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    810
    18
    • HL_36982.3
    HL_36982.3
    • Basepair signature: cWW
    • History status: Exact match
    310
    19
    • HL_68493.6
    HL_68493.6
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Exact match
  • T-loop with 1 bulged base (7)
  • Other HL (1)
  • 710
    20
    • HL_67719.1
    HL_67719.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • Ribsomal LSU H95 (5)
  • 69
    21
    • HL_53760.4
    HL_53760.4
    • Basepair signature: cWW-bif-R-tSH-R
    • History status: Exact match
    89
    22
    • HL_67265.4
    HL_67265.4
    • Basepair signature: cWW-R-tHW-R-R-R-R-R
    • History status: Exact match
    108
    23
    • HL_68304.6
    HL_68304.6
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    68
    24
    • HL_54035.7
    HL_54035.7
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    88
    25
    • HL_04171.4
    HL_04171.4
    • Basepair signature: cWW-cWW-R-cSS-cSS-R
    • History status: Exact match
    108
    26
    • HL_16898.3
    HL_16898.3
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
    57
    27
    • HL_98557.5
    HL_98557.5
    • Basepair signature: cWW
    • History status: Exact match
    37
    28
    • HL_02733.5
    HL_02733.5
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    67
    29
    • HL_23481.5
    HL_23481.5
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    77
    30
    • HL_20743.2
    HL_20743.2
    • Basepair signature: cWW-R-cSS-R-R
    • History status: Exact match
    87
    31
    • HL_67216.5
    HL_67216.5
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    77
    32
    • HL_92681.5
    HL_92681.5
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    77
    33
    • HL_78457.4
    HL_78457.4
    • Basepair signature: cWW-tWH-R-tSH-R
    • History status: Exact match
    86
    34
    • HL_19870.5
    HL_19870.5
    • Basepair signature: cWW-tSH-tHH-tWW-R-R-R
    • History status: Exact match
    116
    35
    • HL_82678.2
    HL_82678.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    66
    36
    • HL_36421.5
    HL_36421.5
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Exact match
    96
    37
    • HL_17926.5
    HL_17926.5
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    96
    38
    • HL_28567.3
    HL_28567.3
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    66
    39
    • HL_56677.5
    HL_56677.5
    • Basepair signature: cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW
    • History status: Exact match
    136
    40
    • HL_15942.5
    HL_15942.5
    • Basepair signature: cWW-R
    • History status: Exact match
    46
    41
    • HL_88225.1
    HL_88225.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
    66
    42
    • HL_22447.1
    HL_22447.1
    • Basepair signature: cWW-R
    • History status: Exact match
    46
    43
    • HL_51876.1
    HL_51876.1
    • Basepair signature: cWW-cWS-R-R-R-R
    • History status: Exact match
    86
    44
    • HL_72451.5
    HL_72451.5
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    86
    45
    • HL_88918.1
    HL_88918.1
    • Basepair signature: cWW-cWS-R-R-R
    • History status: Exact match
    76
    46
    • HL_05018.6
    HL_05018.6
    • Basepair signature: cWW-cSW-R-R-R-R
    • History status: Exact match
    86
    47
    • HL_35894.3
    HL_35894.3
    • Basepair signature: cWW-cSW-R-R
    • History status: Exact match
    66
    48
    • HL_39334.5
    HL_39334.5
    • Basepair signature: cWW-tSW-R-R
    • History status: Exact match
    75
    49
    • HL_43613.4
    HL_43613.4
    • Basepair signature: cWW-tWH-tWH-R
    • History status: Exact match
    75
    50
    • HL_48376.4
    HL_48376.4
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Exact match
    95
    51
    • HL_90642.5
    HL_90642.5
    • Basepair signature: cWW-R-R-tWH-R
    • History status: Exact match
    75
    52
    • HL_66171.3
    HL_66171.3
    • Basepair signature: cWW-R-R
    • History status: Exact match
    55
    53
    • HL_50622.6
    HL_50622.6
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    115
    54
    • HL_29414.1
    HL_29414.1
    • Basepair signature: cWW-R-R-cSH-R-R-R
    • History status: Exact match
    105
    55
    • HL_57052.3
    HL_57052.3
    • Basepair signature: cWW
    • History status: Exact match
    35
    56
    • HL_92304.3
    HL_92304.3
    • Basepair signature: cWW-cSW-R-R-tSH-R-R
    • History status: Exact match
    105
    57
    • HL_32617.3
    HL_32617.3
    • Basepair signature: cWW-cSH
    • History status: Exact match
  • tRNA Sec D-loop (4)
  • CRISPR-Cas9 crRNA hairpin 4 (1)
  • 55
    58
    • HL_16568.1
    HL_16568.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    55
    59
    • HL_69774.3
    HL_69774.3
    • Basepair signature: cWW-tSW-R-R
    • History status: Exact match
    65
    60
    • HL_62869.3
    HL_62869.3
    • Basepair signature: cWW-R-R
    • History status: Exact match
    54
    61
    • HL_31581.4
    HL_31581.4
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    84
    62
    • HL_86769.2
    HL_86769.2
    • Basepair signature: cWW-cSS-cSH
    • History status: Exact match
    74
    63
    • HL_44730.2
    HL_44730.2
    • Basepair signature: cWW-R
    • History status: Exact match
    44
    64
    • HL_73793.2
    HL_73793.2
    • Basepair signature: cWW-tWH-tWH-R-R
    • History status: Exact match
    84
    65
    • HL_06569.2
    HL_06569.2
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    54
    66
    • HL_29487.1
    HL_29487.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    64
    67
    • HL_41778.1
    HL_41778.1
    • Basepair signature: cWW-cWS-tSW
    • History status: Exact match
    64
    68
    • HL_16135.1
    HL_16135.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    104
    69
    • HL_94386.1
    HL_94386.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    64
    70
    • HL_46546.1
    HL_46546.1
    • Basepair signature: cWW-R
    • History status: Exact match
    44
    71
    • HL_94651.1
    HL_94651.1
    • Basepair signature: cWW-tSS-R-R-R
    • History status: Exact match
    74
    72
    • HL_05123.2
    HL_05123.2
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    93
    73
    • HL_49873.1
    HL_49873.1
    • Basepair signature: cWW-tSH-cWS-cWS-R
    • History status: Exact match
  • tRNA Leu D-loop (3)
  • 83
    74
    • HL_86109.1
    HL_86109.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F
    • History status: Exact match
    03
    75
    • HL_17086.2
    HL_17086.2
    • Basepair signature: cWW-cWW-R-tSH-R-tSH-R-R
    • History status: Exact match
    133
    76
    • HL_98885.3
    HL_98885.3
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    103
    77
    • HL_23537.2
    HL_23537.2
    • Basepair signature: cWW-R-R-tWH-R-R-R-R
    • History status: Exact match
    103
    78
    • HL_99223.1
    HL_99223.1
    • Basepair signature: cWW-R
    • History status: Exact match
    43
    79
    • HL_01181.4
    HL_01181.4
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Exact match
    73
    80
    • HL_32273.1
    HL_32273.1
    • Basepair signature: cWW-cWW-cWS-R-R
    • History status: Exact match
    83
    81
    • HL_87080.1
    HL_87080.1
    • Basepair signature: cWW-cWS-R-R-R
    • History status: Exact match
    73
    82
    • HL_96776.3
    HL_96776.3
    • Basepair signature: cWW-cSW-R
    • History status: Exact match
  • Other HL (1)
  • 53
    83
    • HL_37407.2
    HL_37407.2
    • Basepair signature: cWW-R
    • History status: Exact match
    43
    84
    • HL_68529.2
    HL_68529.2
    • Basepair signature: cWW
    • History status: Exact match
    33
    85
    • HL_32458.3
    HL_32458.3
    • Basepair signature: cWW-R-R-R-tWH-R
    • History status: Exact match
    93
    86
    • HL_49196.4
    HL_49196.4
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    63
    87
    • HL_80105.3
    HL_80105.3
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    73
    88
    • HL_11805.3
    HL_11805.3
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    113
    89
    • HL_94352.4
    HL_94352.4
    • Basepair signature: cWW
    • History status: Exact match
    33
    90
    • HL_18722.3
    HL_18722.3
    • Basepair signature: cWW-R
    • History status: Exact match
    43
    91
    • HL_91503.3
    HL_91503.3
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    103
    92
    • HL_32527.3
    HL_32527.3
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    53
    93
    • HL_81205.2
    HL_81205.2
    • Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F
    • History status: Exact match
    143
    94
    • HL_19162.2
    HL_19162.2
    • Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R
    • History status: Exact match
    113
    95
    • HL_12703.2
    HL_12703.2
    • Basepair signature: cWW-R-R
    • History status: Exact match
    53
    96
    • HL_42733.4
    HL_42733.4
    • Basepair signature: cWW-cWW-tSH-R-R
    • History status: Exact match
    83
    97
    • HL_55511.2
    HL_55511.2
    • Basepair signature: cWW-cWS-R
    • History status: Exact match
    53
    98
    • HL_78061.2
    HL_78061.2
    • Basepair signature: cWW-R-R-R-tWH-R-R-R
    • History status: Exact match
    103
    99
    • HL_38646.3
    HL_38646.3
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    73
    100
    • HL_72714.2
    HL_72714.2
    • Basepair signature: cWW-cWW-R-R-R-R-cWH-R
    • History status: Exact match
    113
    101
    • HL_31320.1
    HL_31320.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
    62
    102
    • HL_95464.1
    HL_95464.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    82
    103
    • HL_26772.1
    HL_26772.1
    • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
    • History status: Exact match
    112
    104
    • HL_47934.1
    HL_47934.1
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    62
    105
    • HL_56387.1
    HL_56387.1
    • Basepair signature: cWW-cWH-R
    • History status: Exact match
    52
    106
    • HL_98870.1
    HL_98870.1
    • Basepair signature: cWW-tSH-tWW-F-F-F-F-F
    • History status: Exact match
    02
    107
    • HL_00923.1
    HL_00923.1
    • Basepair signature: cWW-cWW-R-R
    • History status: Exact match
    72
    108
    • HL_08510.1
    HL_08510.1
    • Basepair signature: cWW-F-F-cSH-F-F
    • History status: Exact match
    02
    109
    • HL_49992.1
    HL_49992.1
    • Basepair signature: cWW-cWW-tWH-tWH-R-R
    • History status: Exact match
    102
    110
    • HL_69941.1
    HL_69941.1
    • Basepair signature: cWW-R
    • History status: Exact match
    42
    111
    • HL_90620.1
    HL_90620.1
    • Basepair signature: cWW-F-F-F-F-cSW-cSH-F
    • History status: Exact match
    02
    112
    • HL_31583.1
    HL_31583.1
    • Basepair signature: cWW-R-cSH-R
    • History status: Exact match
    62
    113
    • HL_02906.1
    HL_02906.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    52
    114
    • HL_86843.1
    HL_86843.1
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    72
    115
    • HL_56589.1
    HL_56589.1
    • Basepair signature: cWW-cWS-cSH-R-R-R-R
    • History status: Exact match
    102
    116
    • HL_20751.1
    HL_20751.1
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    02
    117
    • HL_40469.1
    HL_40469.1
    • Basepair signature: cWW-R
    • History status: Exact match
    42
    118
    • HL_50537.3
    HL_50537.3
    • Basepair signature: cWW-cWW-R-R
    • History status: Exact match
    72
    119
    • HL_06048.1
    HL_06048.1
    • Basepair signature: cWW-R-cSS-cSS-R
    • History status: Exact match
    92
    120
    • HL_70970.1
    HL_70970.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    52
    121
    • HL_24625.1
    HL_24625.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    52
    122
    • HL_18218.2
    HL_18218.2
    • Basepair signature: cWW-bif-R-R
    • History status: Exact match
    62
    123
    • HL_51033.1
    HL_51033.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    62
    124
    • HL_60140.1
    HL_60140.1
    • Basepair signature: cWW-bif-R-R
    • History status: Exact match
    62
    125
    • HL_71540.1
    HL_71540.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    72
    126
    • HL_83315.1
    HL_83315.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    82
    127
    • HL_53987.4
    HL_53987.4
    • Basepair signature: cWW-cWS
    • History status: Exact match
    42
    128
    • HL_91287.1
    HL_91287.1
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    62
    129
    • HL_01472.4
    HL_01472.4
    • Basepair signature: cWW-R-tSW-R
    • History status: Exact match
    62
    130
    • HL_25466.1
    HL_25466.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    112
    131
    • HL_80705.1
    HL_80705.1
    • Basepair signature: cWW-tWW-R-R-R
    • History status: Exact match
    72
    132
    • HL_84050.1
    HL_84050.1
    • Basepair signature: cWW-R-cSH
    • History status: Exact match
    62
    133
    • HL_35491.3
    HL_35491.3
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    72
    134
    • HL_46465.1
    HL_46465.1
    • Basepair signature: cWW-tSW-cSH-tHH-tWW-cHW-cWH-cHW-cWH-tWW-cWH-cWH-R-cWH-cWH-R
    • History status: Exact match
    222
    135
    • HL_67052.1
    HL_67052.1
    • Basepair signature: cWW-bif-R-R-R-R
    • History status: Exact match
    82
    136
    • HL_76406.3
    HL_76406.3
    • Basepair signature: cWW-cWH-R-R-R-R
    • History status: Exact match
    92
    137
    • HL_12571.1
    HL_12571.1
    • Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R
    • History status: Exact match
  • tRNA Leu D-loop (2)
  • 132
    138
    • HL_55136.1
    HL_55136.1
    • Basepair signature: cWW-R-R-cSH-cSH
    • History status: Exact match
    82
    139
    • HL_07579.1
    HL_07579.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    142
    140
    • HL_30596.1
    HL_30596.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    82
    141
    • HL_33172.1
    HL_33172.1
    • Basepair signature: cWW-R-tSW
    • History status: Exact match
    52
    142
    • HL_61984.1
    HL_61984.1
    • Basepair signature: cWW
    • History status: Exact match
    32
    143
    • HL_16845.5
    HL_16845.5
    • Basepair signature: cWW-tHH-R
    • History status: Exact match
    52
    144
    • HL_88982.1
    HL_88982.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    82
    145
    • HL_62604.1
    HL_62604.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    62
    146
    • HL_86069.1
    HL_86069.1
    • Basepair signature: cWW-cWH-R
    • History status: Exact match
    52
    147
    • HL_26501.1
    HL_26501.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    148
    • HL_56089.1
    HL_56089.1
    • Basepair signature: cWW-cWW-R-R
    • History status: Exact match
    71
    149
    • HL_90197.1
    HL_90197.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    150
    • HL_00317.1
    HL_00317.1
    • Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    01
    151
    • HL_08291.1
    HL_08291.1
    • Basepair signature: cWW-R-tWH-R-R-R-R-R-R
    • History status: Exact match
    111
    152
    • HL_39228.1
    HL_39228.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    153
    • HL_58912.1
    HL_58912.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    154
    • HL_69818.1
    HL_69818.1
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
    51
    155
    • HL_93221.1
    HL_93221.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    131
    156
    • HL_12773.1
    HL_12773.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    131
    157
    • HL_23219.1
    HL_23219.1
    • Basepair signature: cWW-tSW-cWH-R-cSH
    • History status: Exact match
    61
    158
    • HL_33612.1
    HL_33612.1
    • Basepair signature: cWW-cWH-R-R
    • History status: Exact match
    61
    159
    • HL_43488.1
    HL_43488.1
    • Basepair signature: cWW-L-R-cWW-R-R-R-R
    • History status: Exact match
    111
    160
    • HL_52853.1
    HL_52853.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    161
    • HL_73016.1
    HL_73016.1
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
    61
    162
    • HL_05667.1
    HL_05667.1
    • Basepair signature: cWW
    • History status: Exact match
    31
    163
    • HL_36095.1
    HL_36095.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    91
    164
    • HL_78724.1
    HL_78724.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    165
    • HL_90257.1
    HL_90257.1
    • Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    151
    166
    • HL_20714.1
    HL_20714.1
    • Basepair signature: cWW-cWW-tWH-R-R-R-R-R
    • History status: Exact match
    111
    167
    • HL_59273.1
    HL_59273.1
    • Basepair signature: cWW-tWH-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    151
    168
    • HL_82782.1
    HL_82782.1
    • Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    181
    169
    • HL_93229.1
    HL_93229.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    51
    170
    • HL_02811.1
    HL_02811.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    01
    171
    • HL_12870.1
    HL_12870.1
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    01
    172
    • HL_34135.1
    HL_34135.1
    • Basepair signature: cWW-cWW-tSH-R
    • History status: Exact match
    71
    173
    • HL_53037.1
    HL_53037.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    174
    • HL_63693.1
    HL_63693.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    175
    • HL_73051.1
    HL_73051.1
    • Basepair signature: cWW-cWW-cWH-cWH
    • History status: Exact match
    81
    176
    • HL_96283.1
    HL_96283.1
    • Basepair signature: cWW
    • History status: Exact match
    31
    177
    • HL_05692.1
    HL_05692.1
    • Basepair signature: cWW
    • History status: Exact match
    31
    178
    • HL_17899.1
    HL_17899.1
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Exact match
    81
    179
    • HL_27757.1
    HL_27757.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    180
    • HL_56500.1
    HL_56500.1
    • Basepair signature: cWW-cWW-F-cSH-F-F
    • History status: Exact match
    01
    181
    • HL_00996.1
    HL_00996.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    51
    182
    • HL_08602.1
    HL_08602.1
    • Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F
    • History status: Exact match
    01
    183
    • HL_39425.1
    HL_39425.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-cSH
    • History status: Exact match
    111
    184
    • HL_50374.1
    HL_50374.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    185
    • HL_59297.1
    HL_59297.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    186
    • HL_70505.1
    HL_70505.1
    • Basepair signature: cWW-cWW-tWW-R-R-R-R-R
    • History status: Exact match
    111
    187
    • HL_82851.1
    HL_82851.1
    • Basepair signature: cWW-bif-tSH-R-R-R
    • History status: Exact match
    91
    188
    • HL_93436.1
    HL_93436.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    189
    • HL_13149.1
    HL_13149.1
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Exact match
    91
    190
    • HL_34423.1
    HL_34423.1
    • Basepair signature: cWW-tSH-cWS-cSH-R
    • History status: Exact match
    91
    191
    • HL_53189.1
    HL_53189.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    01
    192
    • HL_64899.1
    HL_64899.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    193
    • HL_73235.1
    HL_73235.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    194
    • HL_96423.1
    HL_96423.1
    • Basepair signature: cWW-tSH-R-R-R-R-R-R
    • History status: Exact match
    101
    195
    • HL_05832.1
    HL_05832.1
    • Basepair signature: cWW-cWW-tSW-R
    • History status: Exact match
    71
    196
    • HL_36552.1
    HL_36552.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    197
    • HL_48636.1
    HL_48636.1
    • Basepair signature: cWW-cWH-R
    • History status: Exact match
    61
    198
    • HL_68478.1
    HL_68478.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    199
    • HL_09712.1
    HL_09712.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    200
    • HL_32255.1
    HL_32255.1
    • Basepair signature: cWW-tWW-F-F-cWW-F-F
    • History status: Exact match
    01
    201
    • HL_59445.1
    HL_59445.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    71
    202
    • HL_70682.1
    HL_70682.1
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: Exact match
    01
    203
    • HL_83007.1
    HL_83007.1
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    61
    204
    • HL_93573.1
    HL_93573.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    205
    • HL_02930.1
    HL_02930.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    101
    206
    • HL_14725.1
    HL_14725.1
    • Basepair signature: cWW-cWW-R-R-R-R
    • History status: Exact match
    91
    207
    • HL_24454.1
    HL_24454.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    208
    • HL_34680.1
    HL_34680.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    209
    • HL_44769.1
    HL_44769.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    210
    • HL_53499.1
    HL_53499.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    211
    • HL_96487.1
    HL_96487.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    212
    • HL_17956.1
    HL_17956.1
    • Basepair signature: cWW-tSH-tHS-R-R
    • History status: Exact match
    81
    213
    • HL_28843.1
    HL_28843.1
    • Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R
    • History status: Exact match
    141
    214
    • HL_48909.1
    HL_48909.1
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Exact match
  • Varkud satellite (VS) ribozyme helix 1 (1)
  • 91
    215
    • HL_79472.1
    HL_79472.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    216
    • HL_90961.1
    HL_90961.1
    • Basepair signature: cWW-tSW
    • History status: Exact match
    41
    217
    • HL_01187.1
    HL_01187.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    218
    • HL_09892.1
    HL_09892.1
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    61
    219
    • HL_20891.1
    HL_20891.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    111
    220
    • HL_41285.1
    HL_41285.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    221
    • HL_59564.1
    HL_59564.1
    • Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    01
    222
    • HL_83225.1
    HL_83225.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    223
    • HL_03427.1
    HL_03427.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    224
    • HL_14859.1
    HL_14859.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    225
    • HL_34974.1
    HL_34974.1
    • Basepair signature: cWW-tSW-R-R
    • History status: Exact match
    61
    226
    • HL_44911.1
    HL_44911.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    227
    • HL_66703.1
    HL_66703.1
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    71
    228
    • HL_06137.1
    HL_06137.1
    • Basepair signature: cWW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-R-cWH-cWH
    • History status: Exact match
    161
    229
    • HL_48962.1
    HL_48962.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    101
    230
    • HL_79564.1
    HL_79564.1
    • Basepair signature: cWW-tSH-cWH-cHW-R-cHW-cWH-cHW-cWH-tSH-cHW-R-cWH-cWH-cHW-cWH-cWH-tSH-R-R
    • History status: Exact match
    221
    231
    • HL_91131.1
    HL_91131.1
    • Basepair signature: cWW-cWW-R-R
    • History status: Exact match
    71
    232
    • HL_01253.1
    HL_01253.1
    • Basepair signature: cWW-tSS-R-R
    • History status: Exact match
    61
    233
    • HL_10536.1
    HL_10536.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: Exact match
    101
    234
    • HL_21000.1
    HL_21000.1
    • Basepair signature: cWW-tSH-tSH-R-R
    • History status: Exact match
    81
    235
    • HL_41739.1
    HL_41739.1
    • Basepair signature: cWW-tWW-R-R-R
    • History status: Exact match
    71
    236
    • HL_94032.1
    HL_94032.1
    • Basepair signature: cWW-cSH-F-F-F-F-F-F
    • History status: Exact match
    01
    237
    • HL_03603.1
    HL_03603.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    151
    238
    • HL_25183.1
    HL_25183.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    239
    • HL_35010.1
    HL_35010.1
    • Basepair signature: cWW-tHH-cSH-R-R
    • History status: Exact match
    81
    240
    • HL_66902.1
    HL_66902.1
    • Basepair signature: cWW-cWS-R-R-R-R-R
    • History status: Exact match
    91
    241
    • HL_74088.1
    HL_74088.1
    • Basepair signature: cWW-tSW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-cWH-cWH-R
    • History status: Exact match
    181
    242
    • HL_96854.1
    HL_96854.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    91
    243
    • HL_18495.1
    HL_18495.1
    • Basepair signature: cWW-cWW-cSH-F-F
    • History status: Exact match
    81
    244
    • HL_37694.1
    HL_37694.1
    • Basepair signature: cWW-cWW-R-tSH-R-R
    • History status: Exact match
    91
    245
    • HL_57204.1
    HL_57204.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    01
    246
    • HL_68863.1
    HL_68863.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    111
    247
    • HL_22443.1
    HL_22443.1
    • Basepair signature: cWW-R-tWH-R-tWH-R-R-R
    • History status: Exact match
    111
    248
    • HL_51090.1
    HL_51090.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
  • tRNA Met D-loop (1)
  • 61
    249
    • HL_60326.1
    HL_60326.1
    • Basepair signature: cWW-cWW-tWH-R-R-R
    • History status: Exact match
    91
    250
    • HL_72066.1
    HL_72066.1
    • Basepair signature: cWW-R-tWH-R-R-R
    • History status: Exact match
    81
    251
    • HL_83704.1
    HL_83704.1
    • Basepair signature: cWW-R-R-cSS-R
    • History status: Exact match
    81
    252
    • HL_03846.1
    HL_03846.1
    • Basepair signature: cWW-L-cWW-R-R-R-R-R
    • History status: Exact match
    111
    253
    • HL_35183.1
    HL_35183.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    254
    • HL_46463.1
    HL_46463.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    255
    • HL_67044.1
    HL_67044.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    81
    256
    • HL_76360.1
    HL_76360.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    257
    • HL_06645.1
    HL_06645.1
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    61
    258
    • HL_30541.1
    HL_30541.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    259
    • HL_37846.1
    HL_37846.1
    • Basepair signature: cWW-tWW-R-R-R
    • History status: Exact match
    71
    260
    • HL_49213.1
    HL_49213.1
    • Basepair signature: cWW-tSH-tHW-R-R-R-R
    • History status: Exact match
    101
    261
    • HL_58200.1
    HL_58200.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    262
    • HL_01925.1
    HL_01925.1
    • Basepair signature: cWW-tSH-cWH-cHW-cHW-cWH-cHW-cWH-tSH-cHW-cWH-cWH-cHW-cWH-cWH-R-R
    • History status: Exact match
    191
    263
    • HL_12053.1
    HL_12053.1
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    51
    264
    • HL_42211.1
    HL_42211.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    131
    265
    • HL_51284.1
    HL_51284.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    101
    266
    • HL_60357.1
    HL_60357.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    267
    • HL_72419.1
    HL_72419.1
    • Basepair signature: cWW-tSH-tHH-R-R-R-R-R
    • History status: Exact match
    111
    268
    • HL_16419.1
    HL_16419.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    269
    • HL_25660.1
    HL_25660.1
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    61
    270
    • HL_55046.1
    HL_55046.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    271
    • HL_88858.1
    HL_88858.1
    • Basepair signature: cWW-bif-tSW
    • History status: Exact match
    61
    272
    • HL_97733.1
    HL_97733.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: Exact match
    01
    273
    • HL_07268.1
    HL_07268.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    111
    274
    • HL_18785.1
    HL_18785.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    275
    • HL_30585.1
    HL_30585.1
    • Basepair signature: cWW-R-R-R-cSS-R-cSW-R-R-R-R-R
    • History status: Exact match
    161
    276
    • HL_38011.1
    HL_38011.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    131
    277
    • HL_49223.1
    HL_49223.1
    • Basepair signature: cWW-tHH-R-R-R
    • History status: Exact match
    71
    278
    • HL_58446.1
    HL_58446.1
    • Basepair signature: cWW-R-R-R-R-R-tSW-R-R
    • History status: Exact match
    121
    279
    • HL_69459.1
    HL_69459.1
    • Basepair signature: cWW
    • History status: Exact match
    21
    280
    • HL_02319.1
    HL_02319.1
    • Basepair signature: cWW-tWH-R-R-R-R-R
    • History status: Exact match
    91
    281
    • HL_22515.1
    HL_22515.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    282
    • HL_42671.1
    HL_42671.1
    • Basepair signature: cWW-R-R-tSS-R-R-R-R
    • History status: Exact match
    111
    283
    • HL_60914.1
    HL_60914.1
    • Basepair signature: cWW-F
    • History status: Exact match
    01
    284
    • HL_84861.1
    HL_84861.1
    • Basepair signature: cWW-F-cSH-F-F
    • History status: Exact match
    01
    285
    • HL_94607.1
    HL_94607.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    286
    • HL_04182.1
    HL_04182.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: Exact match
    101
    287
    • HL_35888.1
    HL_35888.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    01
    288
    • HL_67205.1
    HL_67205.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    289
    • HL_77081.1
    HL_77081.1
    • Basepair signature: cWW-cSW-R
    • History status: Exact match
    51
    290
    • HL_98248.1
    HL_98248.1
    • Basepair signature: cWW-cSH-tHW-R-R-R
    • History status: Exact match
    101
    291
    • HL_38513.1
    HL_38513.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    101
    292
    • HL_49638.1
    HL_49638.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    293
    • HL_58539.1
    HL_58539.1
    • Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F
    • History status: Exact match
    01
    294
    • HL_69677.1
    HL_69677.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    295
    • HL_81820.1
    HL_81820.1
    • Basepair signature: cWW-tSH-tHW-tHW-cSH-F
    • History status: Exact match
    111
    296
    • HL_92488.1
    HL_92488.1
    • Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F
    • History status: Exact match
    01
    297
    • HL_22576.1
    HL_22576.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    101
    298
    • HL_52240.1
    HL_52240.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    299
    • HL_72646.1
    HL_72646.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    300
    • HL_85984.1
    HL_85984.1
    • Basepair signature: cWW-L-R-R-L-cWW-cWW-R-R-R
    • History status: Exact match
    141
    301
    • HL_26129.1
    HL_26129.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R
    • History status: Exact match
    111
    302
    • HL_46771.1
    HL_46771.1
    • Basepair signature: cWW-tSS-F-F-F
    • History status: Exact match
    01
    303
    • HL_98252.1
    HL_98252.1
    • Basepair signature: cWW-tWW-F-F-F-F
    • History status: Exact match
    01
    304
    • HL_19239.1
    HL_19239.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    01
    305
    • HL_30819.1
    HL_30819.1
    • Basepair signature: cWW-cSH-tSS-R-R
    • History status: Exact match
    81
    306
    • HL_49816.1
    HL_49816.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    307
    • HL_58733.1
    HL_58733.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    121
    308
    • HL_82131.1
    HL_82131.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    309
    • HL_02483.1
    HL_02483.1
    • Basepair signature: cWW-tWH-F-cSH-F-F-F
    • History status: Exact match
    01
    310
    • HL_12710.1
    HL_12710.1
    • Basepair signature: cWW-cSH-cWW-R-R-tSH-R-R-R-R-R
    • History status: Exact match
    151
    311
    • HL_23090.1
    HL_23090.1
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Exact match
    81
    312
    • HL_52657.1
    HL_52657.1
    • Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R
    • History status: Exact match
    151
    313
    • HL_95237.1
    HL_95237.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41

    Coloring options:


    Exact match 313;

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