Motif HL_32617.4 Version HL_32617.4 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4P5J_001 | 4P5J | 0.4677 | 3 | D-loop related | A | tRNA-like 3' UTR element | C | 7 | C | 8 | G | 10 | U | 11 | G | 14 | cWW | cSH |
| 2 | HL_5F9R_004 | 5F9R | 0.4123 | 0 | D-loop related | A | tracrRNA | G | 105 | A | 106 | G | 107 | U | 108 | C | 109 | cWW | ncSH |
| 3 | HL_3ADD_001 | 3ADD | 0.2800 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 4 | HL_3AM1_001 | 3AM1 | 0.1850 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 5 | HL_3W3S_001 | 3W3S | 0.0000 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
| 6 | HL_3RG5_005 | 3RG5 | 0.1702 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 7 | HL_6MJ0_007 | 6MJ0 | 0.4634 | 3 | D-loop related | B | tRNA-like 3' UTR element | C | 32 | C | 33 | G | 35 | U | 36 | G | 39 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGUUAG | 2 |
| GUGGUC | 2 |
| GAGUC | 1 |
| UUGGUA | 1 |
| CUGGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 4 |
| CAGUUA | 2 |
| AGU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (4)
- D-loop related (3)
- Basepair signature
- cWW-F-cSH
- Heat map statistics
- Min 0.17 | Avg 0.38 | Max 0.90
Coloring options: