Motif HL_32751.1 Version HL_32751.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_162 | 4V8P | 0.5839 | 1 | F1 | LSU rRNA | U | 67 | A | 68 | A | 69 | C | 70 | A | 72 | cWW | ncSH |
| 2 | HL_5AJ0_002 | 5AJ0 | 0.4137 | 1 | A2 | LSU rRNA | U | 68 | A | 69 | A | 70 | C | 71 | A | 73 | cWW | |
| 3 | HL_3J9W_042 | 3J9W | 0.2554 | 1 | BA | LSU rRNA | C | 228 | A | 229 | A | 230 | A | 231 | G | 233 | cWW | ncSW |
| 4 | HL_3J79_002 | 3J79 | 0.0000 | 1 | A | LSU rRNA | U | 69 | A | 70 | A | 71 | C | 72 | A | 74 | cWW | cSW |
| 5 | HL_4V91_002 | 4V91 | 0.1136 | 1 | 1 | LSU rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 6 | HL_4V88_115 | 4V88 | 0.1628 | 1 | A5 | LSU rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 7 | HL_3J7P_002 | 3J7P | 0.1907 | 1 | 5 | LSU rRNA | U | 68 | A | 69 | A | 70 | C | 71 | A | 73 | cWW | cSW |
| 8 | HL_3JAM_004 | 3JAM | 0.4718 | 1 | 2 | SSU rRNA | C | 189 | C | 190 | U | 191 | U | 192 | G | 194 | cWW | |
| 9 | HL_5AJ0_074 | 5AJ0 | 0.7488 | 3 | A2 | LSU rRNA | C | 4979 | U | 4980 | C | 4982 | C | 4983 | G | 4986 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAACUA | 2 |
| UAACCA | 2 |
| CAACCG | 2 |
| CAAAUG | 1 |
| CCUUUG | 1 |
| CUCCCUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACC | 4 |
| AACU | 2 |
| AAAU | 1 |
| CUUU | 1 |
| UCCCUC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-cSW-R
- Heat map statistics
- Min 0.11 | Avg 0.45 | Max 0.98
Coloring options: