RNA 3D Hub //

Motif HL_32751.1 Version HL_32751.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_4V8P_1624V8P0.58391F1 LSU rRNAU67A68A69C70A72cWWncSH
2 HL_5AJ0_0025AJ00.41371A2 LSU rRNAU68A69A70C71A73cWW
3 HL_3J9W_0423J9W0.25541BA LSU rRNAC228A229A230A231G233cWWncSW
4 HL_3J79_0023J790.00001A LSU rRNAU69A70A71C72A74cWWcSW
5 HL_4V91_0024V910.113611 LSU rRNAC69A70A71C72G74cWWcSW
6 HL_4V88_1154V880.16281A5 LSU rRNAC69A70A71C72G74cWWcSW
7 HL_3J7P_0023J7P0.190715 LSU rRNAU68A69A70C71A73cWWcSW
8 HL_3JAM_0043JAM0.471812 SSU rRNAC189C190U191U192G194cWW
9 HL_5AJ0_0745AJ00.74883A2 LSU rRNAC4979U4980C4982C4983G4986cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAACUA2
UAACCA2
CAACCG2
CAAAUG1
CCUUUG1
CUCCCUCG1
Non-Watson-Crick part of the motif
SequenceCounts
AACC4
AACU2
AAAU1
CUUU1
UCCCUC1

Release history

Release2.0
Date2017-04-24
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
    • Basepair signature
    cWW-cSW-R
    Heat map statistics
    Min 0.11 | Avg 0.45 | Max 0.98
    Help

    Coloring options:

    HL_4V8P_162:HL_4V8P_162 = 0HL_4V8P_162:HL_5AJ0_002 = 0.6593HL_4V8P_162:HL_3J9W_042 = 0.6359HL_4V8P_162:HL_3J79_002 = 0.5839HL_4V8P_162:HL_4V91_002 = 0.6229HL_4V8P_162:HL_4V88_115 = 0.6163HL_4V8P_162:HL_3J7P_002 = 0.634HL_4V8P_162:HL_3JAM_004 = 0.6987HL_4V8P_162:HL_5AJ0_074 = 0.9613HL_5AJ0_002:HL_4V8P_162 = 0.6593HL_5AJ0_002:HL_5AJ0_002 = 0HL_5AJ0_002:HL_3J9W_042 = 0.358HL_5AJ0_002:HL_3J79_002 = 0.4137HL_5AJ0_002:HL_4V91_002 = 0.4016HL_5AJ0_002:HL_4V88_115 = 0.3646HL_5AJ0_002:HL_3J7P_002 = 0.4365HL_5AJ0_002:HL_3JAM_004 = 0.6566HL_5AJ0_002:HL_5AJ0_074 = 0.9761HL_3J9W_042:HL_4V8P_162 = 0.6359HL_3J9W_042:HL_5AJ0_002 = 0.358HL_3J9W_042:HL_3J9W_042 = 0HL_3J9W_042:HL_3J79_002 = 0.2554HL_3J9W_042:HL_4V91_002 = 0.2631HL_3J9W_042:HL_4V88_115 = 0.2664HL_3J9W_042:HL_3J7P_002 = 0.2915HL_3J9W_042:HL_3JAM_004 = 0.4853HL_3J9W_042:HL_5AJ0_074 = 0.8407HL_3J79_002:HL_4V8P_162 = 0.5839HL_3J79_002:HL_5AJ0_002 = 0.4137HL_3J79_002:HL_3J9W_042 = 0.2554HL_3J79_002:HL_3J79_002 = 0HL_3J79_002:HL_4V91_002 = 0.1136HL_3J79_002:HL_4V88_115 = 0.1628HL_3J79_002:HL_3J7P_002 = 0.1907HL_3J79_002:HL_3JAM_004 = 0.4718HL_3J79_002:HL_5AJ0_074 = 0.7488HL_4V91_002:HL_4V8P_162 = 0.6229HL_4V91_002:HL_5AJ0_002 = 0.4016HL_4V91_002:HL_3J9W_042 = 0.2631HL_4V91_002:HL_3J79_002 = 0.1136HL_4V91_002:HL_4V91_002 = 0HL_4V91_002:HL_4V88_115 = 0.117HL_4V91_002:HL_3J7P_002 = 0.1472HL_4V91_002:HL_3JAM_004 = 0.4967HL_4V91_002:HL_5AJ0_074 = 0.7986HL_4V88_115:HL_4V8P_162 = 0.6163HL_4V88_115:HL_5AJ0_002 = 0.3646HL_4V88_115:HL_3J9W_042 = 0.2664HL_4V88_115:HL_3J79_002 = 0.1628HL_4V88_115:HL_4V91_002 = 0.117HL_4V88_115:HL_4V88_115 = 0HL_4V88_115:HL_3J7P_002 = 0.188HL_4V88_115:HL_3JAM_004 = 0.4916HL_4V88_115:HL_5AJ0_074 = 0.7882HL_3J7P_002:HL_4V8P_162 = 0.634HL_3J7P_002:HL_5AJ0_002 = 0.4365HL_3J7P_002:HL_3J9W_042 = 0.2915HL_3J7P_002:HL_3J79_002 = 0.1907HL_3J7P_002:HL_4V91_002 = 0.1472HL_3J7P_002:HL_4V88_115 = 0.188HL_3J7P_002:HL_3J7P_002 = 0HL_3J7P_002:HL_3JAM_004 = 0.5638HL_3J7P_002:HL_5AJ0_074 = 0.844HL_3JAM_004:HL_4V8P_162 = 0.6987HL_3JAM_004:HL_5AJ0_002 = 0.6566HL_3JAM_004:HL_3J9W_042 = 0.4853HL_3JAM_004:HL_3J79_002 = 0.4718HL_3JAM_004:HL_4V91_002 = 0.4967HL_3JAM_004:HL_4V88_115 = 0.4916HL_3JAM_004:HL_3J7P_002 = 0.5638HL_3JAM_004:HL_3JAM_004 = 0HL_3JAM_004:HL_5AJ0_074 = 0.6423HL_5AJ0_074:HL_4V8P_162 = 0.9613HL_5AJ0_074:HL_5AJ0_002 = 0.9761HL_5AJ0_074:HL_3J9W_042 = 0.8407HL_5AJ0_074:HL_3J79_002 = 0.7488HL_5AJ0_074:HL_4V91_002 = 0.7986HL_5AJ0_074:HL_4V88_115 = 0.7882HL_5AJ0_074:HL_3J7P_002 = 0.844HL_5AJ0_074:HL_3JAM_004 = 0.6423HL_5AJ0_074:HL_5AJ0_074 = 0HL_4V8P_162HL_5AJ0_002HL_3J9W_042HL_3J79_002HL_4V91_002HL_4V88_115HL_3J7P_002HL_3JAM_004HL_5AJ0_074Discrepancy0.000.200.400.600.80
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