HL_5AJ0_074

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|C|4981, 5AJ0|1|A2|U|4984, 5AJ0|1|A2|C|4985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32751.1

Basepair signature

cWW-cSW-R

Number of instances in this motif group

9

Unit IDs

5AJ0|1|A2|C|4979
5AJ0|1|A2|U|4980
5AJ0|1|A2|C|4981
5AJ0|1|A2|C|4982
5AJ0|1|A2|C|4983
5AJ0|1|A2|U|4984
5AJ0|1|A2|C|4985
5AJ0|1|A2|G|4986

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L22

Chain BI

40S ribosomal protein S8