#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 71-72-6
1 HL_2QBG_0102QBG0.11170B23S rRNAC246G247G248C249G250A251G252cWWntSH
2 HL_4IOA_0084IOA0.09130X LSU rRNAC223G224G225C226G227A228G229cWWtSH
3 HL_3V2F_0083V2F0.00000A23S Ribosomal RNAC246G247G248C249G250A251G252cWWtSH
4 HL_3U5H_0033U5H0.09770525S rRNAC90G91G92C93G94A95G96cWWtSH
5 HL_4A1B_0034A1B0.12610126S RRNAU88G89G90C91G92A93A94cWWtSH
6 HL_1S72_0081S720.272100 LSU rRNAC217C218G219C220G221A222G223cWWtSH
7 HL_3U5F_0323U5F0.67640618S rRNAU1396U1397U1398C1399A1400A1401G1402cWWntSH
8 HL_4BPP_0314BPP0.76880A18S RRNAC1367A1368A1369U1370A1371A1372G1373cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCGAG4
UGGCGAA1
CCGCGAG1
UUUCAAG1
CAAUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGCGA5
CGCGA1
UUCAA1
AAUAA1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-042013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in HL_33402.3Only in the parent motif
HL_33402.2
Compare
HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_3V2F_008, HL_4IOA_008, HL_1S72_008, HL_3U5H_003HL_4BPP_031

Children motifs

Child motifCommon motif instancesOnly in HL_33402.3Only in the child motif
HL_33402.4
Compare
HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_4IOA_008, HL_1S72_008, HL_3U5H_003, HL_4BPP_031HL_3V2F_008HL_4NVV_007, HL_1VW3_006
Annotations
  • (8)
  • Basepair signature
    cWW-tSH-R-R-R
    Heat map statistics
    Min 0.09 | Avg 0.37 | Max 0.80
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