Motif HL_33402.2 Version HL_33402.2 of this group appears in releases 1.1 to 1.4
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_2QBG_010 | 2QBG | 0.1117 | 0 | B | 23S rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH |
2 | HL_4IOA_008 | 4IOA | 0.0913 | 0 | X | LSU rRNA | C | 223 | G | 224 | G | 225 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | tSH |
3 | HL_3V2F_008 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | tSH |
4 | HL_3U5H_003 | 3U5H | 0.0977 | 0 | 5 | 25S rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH |
5 | HL_4A1B_003 | 4A1B | 0.1261 | 0 | 1 | 26S RRNA | U | 88 | G | 89 | G | 90 | C | 91 | G | 92 | A | 93 | A | 94 | cWW | tSH |
6 | HL_1S72_008 | 1S72 | 0.2721 | 0 | 0 | LSU rRNA | C | 217 | C | 218 | G | 219 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH |
7 | HL_3U5F_032 | 3U5F | 0.6764 | 0 | 6 | 18S rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ntSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGGCGAG | 4 |
UGGCGAA | 1 |
CCGCGAG | 1 |
UUUCAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGCGA | 5 |
CGCGA | 1 |
UUCAA | 1 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 |
---|---|---|---|---|
Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in HL_33402.2 | Only in the parent motif |
---|---|---|---|
HL_33402.1 Compare | HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_3V2F_008, HL_1S72_008, HL_3U5H_003 | HL_4IOA_008 | HL_2ZJR_008 |
Children motifs
Child motif | Common motif instances | Only in HL_33402.2 | Only in the child motif |
---|---|---|---|
HL_33402.3 Compare | HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_3V2F_008, HL_4IOA_008, HL_1S72_008, HL_3U5H_003 | HL_4BPP_031 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.27 | Max 0.68
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