#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-6
1 HL_2QBG_0102QBG0.11170B23S rRNAC246G247G248C249G250A251G252cWWntSH
2 HL_4IOA_0084IOA0.09130X LSU rRNAC223G224G225C226G227A228G229cWWtSH
3 HL_3V2F_0083V2F0.00000A23S Ribosomal RNAC246G247G248C249G250A251G252cWWtSH
4 HL_3U5H_0033U5H0.09770525S rRNAC90G91G92C93G94A95G96cWWtSH
5 HL_4A1B_0034A1B0.12610126S RRNAU88G89G90C91G92A93A94cWWtSH
6 HL_1S72_0081S720.272100 LSU rRNAC217C218G219C220G221A222G223cWWtSH
7 HL_3U5F_0323U5F0.67640618S rRNAU1396U1397U1398C1399A1400A1401G1402cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCGAG4
UGGCGAA1
CCGCGAG1
UUUCAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGCGA5
CGCGA1
UUCAA1

Release history

Release1.11.21.31.4
Date2013-04-062013-05-042013-06-012013-07-03
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in HL_33402.2Only in the parent motif
HL_33402.1
Compare
HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_3V2F_008, HL_1S72_008, HL_3U5H_003HL_4IOA_008HL_2ZJR_008

Children motifs

Child motifCommon motif instancesOnly in HL_33402.2Only in the child motif
HL_33402.3
Compare
HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_3V2F_008, HL_4IOA_008, HL_1S72_008, HL_3U5H_003HL_4BPP_031
Annotations
  • (7)
  • Basepair signature
    cWW-tSH-R-R-R
    Heat map statistics
    Min 0.09 | Avg 0.27 | Max 0.68
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