Motif HL_33402.5 Version HL_33402.5 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_006 | 1VW3 | 0.2731 | 0 | A | LSU rRNA | U | 286 | G | 287 | G | 288 | U | 289 | G | 290 | A | 291 | G | 292 | cWW | ntSH |
| 2 | HL_2QBG_010 | 2QBG | 0.1322 | 0 | B | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH |
| 3 | HL_4IOA_008 | 4IOA | 0.1053 | 0 | X | LSU rRNA | C | 223 | G | 224 | G | 225 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | tSH |
| 4 | HL_4NVV_007 | 4NVV | 0.1015 | 0 | A | LSU rRNA | C | 235 | G | 236 | G | 237 | C | 238 | G | 239 | A | 240 | G | 241 | cWW | ntSH |
| 5 | HL_4CUV_003 | 4CUV | 0.0000 | 0 | 1 | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH |
| 6 | HL_3U5H_003 | 3U5H | 0.1209 | 0 | 5 | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH |
| 7 | HL_4A1B_003 | 4A1B | 0.1276 | 0 | 1 | LSU rRNA | U | 88 | G | 89 | G | 90 | C | 91 | G | 92 | A | 93 | A | 94 | cWW | tSH |
| 8 | HL_1S72_008 | 1S72 | 0.2581 | 0 | 0 | LSU rRNA | C | 217 | C | 218 | G | 219 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH |
| 9 | HL_4CUX_032 | 4CUX | 0.6241 | 0 | 2 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | ncWW | |
| 10 | HL_3U5F_032 | 3U5F | 0.6308 | 0 | 6 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ntSH |
| 11 | HL_4BPP_031 | 4BPP | 0.7718 | 0 | A | SSU rRNA | C | 1367 | A | 1368 | A | 1369 | U | 1370 | A | 1371 | A | 1372 | G | 1373 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGAG | 5 |
| UUUCAAG | 2 |
| UGGUGAG | 1 |
| UGGCGAA | 1 |
| CCGCGAG | 1 |
| CAAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGA | 6 |
| UUCAA | 2 |
| GGUGA | 1 |
| CGCGA | 1 |
| AAUAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_33402.5 | Only in the parent motif |
|---|---|---|---|
| HL_33402.4 Compare | HL_4A1B_003, HL_3U5F_032, HL_4NVV_007, HL_2QBG_010, HL_1VW3_006, HL_4IOA_008, HL_1S72_008, HL_3U5H_003, HL_4BPP_031 | HL_4CUV_003, HL_4CUX_032 |
Children motifs
| Child motif | Common motif instances | Only in HL_33402.5 | Only in the child motif |
|---|---|---|---|
| HL_33402.6 Compare | HL_4A1B_003, HL_1S72_008, HL_3U5F_032, HL_4NVV_007, HL_1VW3_006, HL_2QBG_010, HL_4CUV_003, HL_4IOA_008, HL_4CUX_032, HL_3U5H_003, HL_4BPP_031 | HL_1VX2_028, HL_3J7A_028, HL_1VX6_003 |
- Annotations
-
- (11)
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.40 | Max 0.82
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