Motif HL_34108.6 Version HL_34108.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_026 | 2QBG | 0.8452 | 2 | B | 23S rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW |
| 2 | HL_1S72_026 | 1S72 | 0.8181 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW |
| 3 | HL_4IOA_024 | 4IOA | 0.7880 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW |
| 4 | HL_1VW3_017 | 1VW3 | 0.6277 | 2 | A | 21S ribosomal RNA | U | 717 | U | 719 | A | 720 | G | 722 | cWW |
| 5 | HL_4QCN_024 | 4QCN | 0.3131 | 2 | A | 23S Ribosomal RNA | U | 873 | U | 875 | A | 876 | G | 878 | cWW |
| 6 | HL_1VX6_023 | 1VX6 | 0.0000 | 2 | A | 28S ribosomal RNA | U | 1077 | U | 1079 | C | 1080 | G | 1082 | cWW |
| 7 | HL_4A1B_023 | 4A1B | 0.2728 | 2 | 1 | 26S RRNA | U | 983 | U | 985 | C | 986 | G | 988 | cWW |
| 8 | HL_1VWW_022 | 1VWW | 0.4543 | 3 | 5 | 28S ribosomal RNA | C | 1675 | U | 1677 | C | 1678 | G | 1680 | cWW |
| 9 | HL_4CUV_022 | 4CUV | 0.4707 | 2 | 1 | 25S RRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
| 10 | HL_3U5H_022 | 3U5H | 0.6535 | 2 | 5 | 25S rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 2 |
| UCUCAG | 2 |
| CCUCAG | 2 |
| UCGAAG | 1 |
| UUGAGG | 1 |
| UGUAAG | 1 |
| CGAAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 4 |
| UUAG | 2 |
| CGAA | 1 |
| UGAG | 1 |
| GUAA | 1 |
| GAAAC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_34108.6 | Only in the parent motif |
|---|---|---|---|
| HL_34108.5 Compare | HL_3U5H_022, HL_2QBG_026, HL_4CUV_022, HL_4A1B_023, HL_4IOA_024, HL_1VW3_017, HL_1VWW_022, HL_1VX6_023, HL_1S72_026 | HL_4QCN_024 | HL_4NVV_024 |
Children motifs
| Child motif | Common motif instances | Only in HL_34108.6 | Only in the child motif |
|---|---|---|---|
| HL_34108.7 Compare | HL_4QCN_024, HL_3U5H_022, HL_2QBG_026, HL_4CUV_022, HL_4A1B_023, HL_1VW3_017, HL_4IOA_024, HL_1VX6_023, HL_1S72_026 | HL_1VWW_022 | HL_4W21_022 |
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