RNA 3D Hub //

Motif HL_34108.7 Version HL_34108.7 of this group appears in releases 1.18 to 1.18

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-4
1 HL_2QBG_0262QBG0.84522B23S rRNAU826U828A829G831cWW
2 HL_1S72_0261S720.818120 LSU rRNAU919G921A922G924cWW
3 HL_4IOA_0244IOA0.78802X LSU rRNAU839G841A842G844cWW
4 HL_1VW3_0171VW30.62772A21S ribosomal RNAU717U719A720G722cWW
5 HL_4QCN_0244QCN0.31312A23S Ribosomal RNAU873U875A876G878cWW
6 HL_1VX6_0231VX60.00002A28S ribosomal RNAU1077U1079C1080G1082cWW
7 HL_4A1B_0234A1B0.27282126S RRNAU983U985C986G988cWW
8 HL_4W21_0224W210.38122528S ribosomal RNAC1675U1677C1678G1680cWW
9 HL_4CUV_0224CUV0.47072125S RRNAC958U960C961G963cWW
10 HL_3U5H_0223U5H0.65352525S rRNAC958U960C961G963cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCUCAG3
UUUAGG2
UCUCAG2
UCGAAG1
UUGAGG1
UGUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
CUCA5
UUAG2
CGAA1
UGAG1
GUAA1

Release history

Release1.18
Date2014-10-09
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_34108.7Only in the parent motif
HL_34108.6
Compare		HL_4QCN_024, HL_3U5H_022, HL_2QBG_026, HL_4CUV_022, HL_4A1B_023, HL_1VW3_017, HL_4IOA_024, HL_1VX6_023, HL_1S72_026HL_4W21_022HL_1VWW_022

Children motifs

This motif has no children motifs.
Annotations
  • (10)
    • Basepair signature
    cWW-R
    Heat map statistics
    Min 0.16 | Avg 0.63 | Max 1.06
    Help

    Coloring options:

    HL_2QBG_026:HL_2QBG_026 = 0HL_2QBG_026:HL_1S72_026 = 0.1596HL_2QBG_026:HL_4IOA_024 = 0.2428HL_2QBG_026:HL_1VW3_017 = 1.0457HL_2QBG_026:HL_4QCN_024 = 0.7749HL_2QBG_026:HL_1VX6_023 = 0.8452HL_2QBG_026:HL_4A1B_023 = 0.868HL_2QBG_026:HL_4W21_022 = 0.9465HL_2QBG_026:HL_4CUV_022 = 0.9056HL_2QBG_026:HL_3U5H_022 = 1.0024HL_1S72_026:HL_2QBG_026 = 0.1596HL_1S72_026:HL_1S72_026 = 0HL_1S72_026:HL_4IOA_024 = 0.1939HL_1S72_026:HL_1VW3_017 = 1.061HL_1S72_026:HL_4QCN_024 = 0.7827HL_1S72_026:HL_1VX6_023 = 0.8181HL_1S72_026:HL_4A1B_023 = 0.8138HL_1S72_026:HL_4W21_022 = 0.8973HL_1S72_026:HL_4CUV_022 = 0.9237HL_1S72_026:HL_3U5H_022 = 1.015HL_4IOA_024:HL_2QBG_026 = 0.2428HL_4IOA_024:HL_1S72_026 = 0.1939HL_4IOA_024:HL_4IOA_024 = 0HL_4IOA_024:HL_1VW3_017 = 0.9552HL_4IOA_024:HL_4QCN_024 = 0.7765HL_4IOA_024:HL_1VX6_023 = 0.788HL_4IOA_024:HL_4A1B_023 = 0.7742HL_4IOA_024:HL_4W21_022 = 0.8714HL_4IOA_024:HL_4CUV_022 = 0.9493HL_4IOA_024:HL_3U5H_022 = 1.0321HL_1VW3_017:HL_2QBG_026 = 1.0457HL_1VW3_017:HL_1S72_026 = 1.061HL_1VW3_017:HL_4IOA_024 = 0.9552HL_1VW3_017:HL_1VW3_017 = 0HL_1VW3_017:HL_4QCN_024 = 0.7147HL_1VW3_017:HL_1VX6_023 = 0.6277HL_1VW3_017:HL_4A1B_023 = 0.7107HL_1VW3_017:HL_4W21_022 = 0.7818HL_1VW3_017:HL_4CUV_022 = 0.8892HL_1VW3_017:HL_3U5H_022 = 0.9918HL_4QCN_024:HL_2QBG_026 = 0.7749HL_4QCN_024:HL_1S72_026 = 0.7827HL_4QCN_024:HL_4IOA_024 = 0.7765HL_4QCN_024:HL_1VW3_017 = 0.7147HL_4QCN_024:HL_4QCN_024 = 0HL_4QCN_024:HL_1VX6_023 = 0.3131HL_4QCN_024:HL_4A1B_023 = 0.5245HL_4QCN_024:HL_4W21_022 = 0.5635HL_4QCN_024:HL_4CUV_022 = 0.6154HL_4QCN_024:HL_3U5H_022 = 0.7935HL_1VX6_023:HL_2QBG_026 = 0.8452HL_1VX6_023:HL_1S72_026 = 0.8181HL_1VX6_023:HL_4IOA_024 = 0.788HL_1VX6_023:HL_1VW3_017 = 0.6277HL_1VX6_023:HL_4QCN_024 = 0.3131HL_1VX6_023:HL_1VX6_023 = 0HL_1VX6_023:HL_4A1B_023 = 0.2728HL_1VX6_023:HL_4W21_022 = 0.3812HL_1VX6_023:HL_4CUV_022 = 0.4707HL_1VX6_023:HL_3U5H_022 = 0.6535HL_4A1B_023:HL_2QBG_026 = 0.868HL_4A1B_023:HL_1S72_026 = 0.8138HL_4A1B_023:HL_4IOA_024 = 0.7742HL_4A1B_023:HL_1VW3_017 = 0.7107HL_4A1B_023:HL_4QCN_024 = 0.5245HL_4A1B_023:HL_1VX6_023 = 0.2728HL_4A1B_023:HL_4A1B_023 = 0HL_4A1B_023:HL_4W21_022 = 0.3068HL_4A1B_023:HL_4CUV_022 = 0.5347HL_4A1B_023:HL_3U5H_022 = 0.6858HL_4W21_022:HL_2QBG_026 = 0.9465HL_4W21_022:HL_1S72_026 = 0.8973HL_4W21_022:HL_4IOA_024 = 0.8714HL_4W21_022:HL_1VW3_017 = 0.7818HL_4W21_022:HL_4QCN_024 = 0.5635HL_4W21_022:HL_1VX6_023 = 0.3812HL_4W21_022:HL_4A1B_023 = 0.3068HL_4W21_022:HL_4W21_022 = 0HL_4W21_022:HL_4CUV_022 = 0.3757HL_4W21_022:HL_3U5H_022 = 0.4893HL_4CUV_022:HL_2QBG_026 = 0.9056HL_4CUV_022:HL_1S72_026 = 0.9237HL_4CUV_022:HL_4IOA_024 = 0.9493HL_4CUV_022:HL_1VW3_017 = 0.8892HL_4CUV_022:HL_4QCN_024 = 0.6154HL_4CUV_022:HL_1VX6_023 = 0.4707HL_4CUV_022:HL_4A1B_023 = 0.5347HL_4CUV_022:HL_4W21_022 = 0.3757HL_4CUV_022:HL_4CUV_022 = 0HL_4CUV_022:HL_3U5H_022 = 0.2216HL_3U5H_022:HL_2QBG_026 = 1.0024HL_3U5H_022:HL_1S72_026 = 1.015HL_3U5H_022:HL_4IOA_024 = 1.0321HL_3U5H_022:HL_1VW3_017 = 0.9918HL_3U5H_022:HL_4QCN_024 = 0.7935HL_3U5H_022:HL_1VX6_023 = 0.6535HL_3U5H_022:HL_4A1B_023 = 0.6858HL_3U5H_022:HL_4W21_022 = 0.4893HL_3U5H_022:HL_4CUV_022 = 0.2216HL_3U5H_022:HL_3U5H_022 = 0HL_2QBG_026HL_1S72_026HL_4IOA_024HL_1VW3_017HL_4QCN_024HL_1VX6_023HL_4A1B_023HL_4W21_022HL_4CUV_022HL_3U5H_022Discrepancy0.000.200.400.600.801.00
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