Motif HL_34217.1 Version HL_34217.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_6CZR_074 | 6CZR | 0.3842 | 2 | GNRA | 1a | SSU rRNA | G | 153 | G | 154 | A | 157 | C | 158 | ncWW | ntSH |
2 | HL_1M5K_003 | 1M5K | 0.2029 | 2 | GNRA | B | RNA HAIRPIN RIBOZYME | G | 74 | G | 75 | A | 78 | C | 79 | cWW | ntSH |
3 | HL_2CZJ_007 | 2CZJ | 0.0000 | 2 | UNCG variation | H | tmRNA (63-MER) | G | 25 | U | 26 | G | 29 | C | 30 | cWW | |
4 | HL_6N5P_002 | 6N5P | 0.4727 | 3 | A | cyclic di-AMP riboswitch | G | 58 | U | 59 | G | 63 | C | 64 | ncWW | ||
5 | HL_7A0S_046 | 7A0S | 0.4806 | 3 | X | LSU rRNA | C | 1797 | G | 1798 | A | 1802 | G | 1803 | cWW | tSH | |
6 | HL_5J7L_026 | 5J7L | 0.4150 | 3 | GNRA (H) | AA | SSU rRNA | U | 1165 | G | 1166 | A | 1170 | A | 1171 | cWW | tSH |
7 | HL_8HNT_002 | 8HNT | 0.4801 | 2 | B | sgRNA | U | 103 | G | 104 | A | 107 | G | 108 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAAAC | 2 |
GUUCGC | 1 |
GUGAAGC | 1 |
CGAACAG | 1 |
UGAUAAA | 1 |
UGUAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAA | 2 |
UUCG | 1 |
UGAAG | 1 |
GAACA | 1 |
GAUAA | 1 |
GUAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- GNRA (2)
- UNCG variation (1)
- GNRA (H) (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.20 | Avg 0.42 | Max 0.76
Coloring options: