Motif HL_35624.1 Version HL_35624.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AXM_001 | 5AXM | 0.0000 | 3 | tRNA D-loop | P | C | 13 | A | 14 | G | 15 | G | 19 | G | 20 | A | 21 | G | 22 | cWW | ncWS |
| 2 | HL_5AXM_004 | 5AXM | 0.0000 | 3 | P | C | 13||||2_555 | A | 14||||2_555 | G | 15||||2_555 | G | 19||||2_555 | G | 20||||2_555 | A | 21||||2_555 | G | 22||||2_555 | cWW | ncWS | |
| 3 | HL_4RDX_001 | 4RDX | 0.7399 | 4 | C | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ||
| 4 | HL_4RDX_004 | 4RDX | 0.7399 | 4 | C | C | 13||||4_577 | A | 14||||4_577 | G | 15||||4_577 | G | 19||||4_577 | U | 20||||4_577 | A | 21||||4_577 | G | 22||||4_577 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUUGGGAG | 2 |
| CAGCUGGUUAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUUGGGA | 2 |
| AGCUGGUUA | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.74 | Avg 0.37 | Max 0.74
Coloring options: