Motif HL_36421.4 Version HL_36421.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_062 | 4V9F | 0.3175 | 0 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2508 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH | |
| 2 | HL_4Y4O_163 | 4Y4O | 0.1481 | 0 | 2A | LSU rRNA | C | 2471 | G | 2472 | U | 2473 | C | 2474 | C | 2475 | A | 2476 | C | 2477 | A | 2478 | G | 2479 | cWW | tSH | |
| 3 | HL_5J7L_193 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | A | 2471 | G | 2472 | U | 2473 | U | 2474 | C | 2475 | A | 2476 | U | 2477 | A | 2478 | U | 2479 | cWW | tSH | |
| 4 | HL_7A0S_059 | 7A0S | 0.1589 | 0 | X | LSU rRNA | A | 2450 | G | 2451 | U | 2452 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH | |
| 5 | HL_4WF9_056 | 4WF9 | 0.1533 | 0 | X | LSU rRNA | A | 2498 | G | 2499 | U | 2500 | U | 2501 | C | 2502 | A | 2503 | C | 2504 | A | 2505 | U | 2506 | cWW | tSH | |
| 6 | HL_5TBW_061 | 5TBW | 0.3730 | 0 | 1 | LSU rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCACAUAU | 1 |
| CGUCCACAG | 1 |
| AGUUCAUAU | 1 |
| AGUCCAUAU | 1 |
| AGUUCACAU | 1 |
| CGUUCAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 2 |
| GCACAUA | 1 |
| GUCCACA | 1 |
| GUCCAUA | 1 |
| GUUCACA | 1 |
- Annotations
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.24 | Max 0.50
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