Motif HL_36421.4 Version HL_36421.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8
1	HL_4V9F_062	4V9F	0.3175	0	LSU rRNA	A	2506	G	2507	C	2508	A	2509	C	2510	A	2511	U	2512	A	2513	U	2514	cWW	tSH
2	HL_4Y4O_163	4Y4O	0.1481	2A	LSU rRNA	C	2471	G	2472	U	2473	C	2474	C	2475	A	2476	C	2477	A	2478	G	2479	cWW	tSH
3	HL_5J7L_193	5J7L	0.0000	DA	LSU rRNA	A	2471	G	2472	U	2473	U	2474	C	2475	A	2476	U	2477	A	2478	U	2479	cWW	tSH
4	HL_7A0S_059	7A0S	0.1589	X	LSU rRNA	A	2450	G	2451	U	2452	C	2453	C	2454	A	2455	U	2456	A	2457	U	2458	cWW	tSH
5	HL_4WF9_056	4WF9	0.1533	X	LSU rRNA	A	2498	G	2499	U	2500	U	2501	C	2502	A	2503	C	2504	A	2505	U	2506	cWW	tSH
6	HL_5TBW_061	5TBW	0.3730	1	LSU rRNA	C	2840	G	2841	U	2842	U	2843	C	2844	A	2845	U	2846	A	2847	G	2848	cWW	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AGCACAUAU	1
CGUCCACAG	1
AGUUCAUAU	1
AGUCCAUAU	1
AGUUCACAU	1
CGUUCAUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUCAUA	2
GCACAUA	1
GUCCACA	1
GUCCAUA	1
GUUCACA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-tSH-R-R-R-R-R
Heat map statistics: Min 0.14 | Avg 0.24 | Max 0.50

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