Motif HL_36514.1 Version HL_36514.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 1-2 | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5J7L_135 | 5J7L | 0.5794 | 7 | Pseudoknot geometry (H) | DA | LSU rRNA | U | 87 | A | 95 | cWW |
2 | HL_8V1I_005 | 8V1I | 0.0000 | 7 | B | mascRNA | U | 22 | A | 30 | cWW | |
3 | HL_1GID_008 | 1GID | 0.4163 | 3 | B | P4-P6 RNA RIBOZYME DOMAIN | A | 235 | U | 239 | ncWW | |
4 | HL_1WZ2_006 | 1WZ2 | 0.8442 | 7 | D | tRNA | A | 934 | U | 942 | cWW | |
5 | HL_4KR9_003 | 4KR9 | 0.5646 | 4 | X | RNA (39-MER) | G | 10 | C | 15 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAUAUGAA | 1 |
UGGUUUCCA | 1 |
AUCUU | 1 |
ACUCAAGAU | 1 |
GUGUCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAUAUGA | 1 |
GGUUUCC | 1 |
UCU | 1 |
CUCAAGA | 1 |
UGUC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Pseudoknot geometry (H) (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.33 | Avg 0.50 | Max 0.88
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