#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 21-2
1 HL_5J7L_1355J7L0.57947Pseudoknot geometry (H)DA LSU rRNAU87A95cWW
2 HL_8V1I_0058V1I0.00007BmascRNAU22A30cWW
3 HL_1GID_0081GID0.41633BP4-P6 RNA RIBOZYME DOMAINA235U239ncWW
4 HL_1WZ2_0061WZ20.84427DtRNAA934U942cWW
5 HL_4KR9_0034KR90.56464XRNA (39-MER)G10C15cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAUAUGAA1
UGGUUUCCA1
AUCUU1
ACUCAAGAU1
GUGUCC1
Non-Watson-Crick part of the motif
SequenceCounts
GAUAUGA1
GGUUUCC1
UCU1
CUCAAGA1
UGUC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Pseudoknot geometry (H) (1)
  • Basepair signature
    cWW
    Heat map statistics
    Min 0.33 | Avg 0.50 | Max 0.88
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