Motif HL_38130.1 Version HL_38130.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1XPE_002 | 1XPE | 0.0000 | 2 | B | RNA (23-mer) | G | 7 | G | 10 | C | 11 | G | 12 | C | 13 | G | 14 | C | 15 | A | 16 | C | 17 | cWW |
| 2 | HL_2QBG_004 | 2QBG | 0.0847 | 0 | B | 23S rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
| 3 | HL_1XPE_001 | 1XPE | 0.7523 | 2 | A | RNA (23-mer) | G | 7 | G | 10 | C | 11 | G | 12 | C | 13 | G | 14 | C | 15 | A | 16 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGCGCGCAC | 2 |
| UGAUAUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCGCGCA | 2 |
| GAUAUGA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_38130.1 | Only in the child motif |
|---|---|---|---|
| HL_38130.2 Compare | HL_1XPE_002, HL_1XPE_001 | HL_2QBG_004 | |
| HL_29369.2 Compare | HL_2QBG_004 | HL_1XPE_002, HL_1XPE_001 | HL_3DIR_002, HL_1F27_001, HL_3PYO_002, HL_3D0U_002 |
Coloring options: