Motif HL_38227.2 Version HL_38227.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_045 | 3O58 | 0.0000 | 1 | 1 | 25S ribosomal RNA | G | 2110 | U | 2112 | A | 2113 | C | 2114 | cWW |
| 2 | HL_2PLY_001 | 2PLY | 0.8116 | 0 | C | RNA (23-mer) | G | 22 | G | 23 | U | 24 | C | 25 | cWW |
| 3 | HL_2PJP_001 | 2PJP | 0.8367 | 0 | B | SECIS RNA | G | 22 | G | 23 | U | 24 | C | 25 | cWW |
| 4 | HL_2PLY_002 | 2PLY | 0.8840 | 0 | E | RNA (23-mer) | G | 22 | G | 23 | U | 24 | C | 25 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUC | 3 |
| GGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU | 3 |
| GUA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_38227.2 | Only in the parent motif |
|---|---|---|---|
| HL_38227.1 Compare | HL_2PJP_001, HL_2PLY_002, HL_2PLY_001 | HL_3O58_045 | HL_2ZUE_002 |
| HL_61409.1 Compare | HL_3O58_045 | HL_2PJP_001, HL_2PLY_002, HL_2PLY_001 | HL_1XOK_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_38227.2 | Only in the child motif |
|---|---|---|---|
| HL_73023.1 Compare | HL_2PJP_001, HL_2PLY_002 | HL_3O58_045, HL_2PLY_001 | HL_2ZUF_002 |
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