Motif HL_38901.2 Version HL_38901.2 of this group appears in releases 3.95 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	3-4
1	HL_5F9R_004	5F9R	0.3894	0	D-loop related	A	tracrRNA	G	105	A	106	G	107	U	108	C	109	cWW	ncSH
2	HL_3RG5_005	3RG5	0.2355	1	tRNA D-loop	B	Selenocysteine transfer RNA	G	15	U	16	G	19	U	20	C	20\|\|\|A	cWW	cSH
3	HL_3W3S_001	3W3S	0.1850	1	tRNA D-loop	B	Selenocysteine transfer RNA	C	15	U	16	G	19	U	20	G	20\|\|\|A	cWW	cSH
4	HL_3AM1_001	3AM1	0.0000	1	tRNA D-loop	B	ASL-truncated tRNA	U	18	U	19	G	21	U	22	A	23	cWW	cSH
5	HL_3ADD_001	3ADD	0.2334	1	tRNA D-loop	C	Selenocysteine transfer RNA	G	15	U	16	G	19	U	20	C	20\|\|\|A	cWW	cSH
6	HL_8P9A_219	8P9A	0.6098	1		sR	SSU rRNA	C	1359	A	1360	U	1362	U	1363	G	1364	cWW
7	HL_4KR9_004	4KR9	0.9092	1		X	RNA (39-MER)	G	19	G	20	A	22	A	23	C	24	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUGGUC	2
GAGUC	1
CUGGUG	1
UUGGUA	1
CAUUUG	1
GGAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGGU	4
AGU	1
AUUU	1
GAAA	1

Release history

Release	3.95	3.96	3.97	3.98
Date	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (4)
(2)
D-loop related (1)
Basepair signature: cWW-F-cSH
Heat map statistics: Min 0.17 | Avg 0.47 | Max 0.92

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